Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 735 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 588 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 414 / 9e-137 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 405 / 3e-133 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 382 / 2e-124 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 344 / 2e-109 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G53320 329 / 2e-104 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 328 / 3e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 321 / 1e-100 RLK902 receptor-like kinase 902 (.1) AT1G48480 317 / 3e-99 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035012 [exp] 1030 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 870 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 865 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 418 / 3e-138 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025210 [exp] 404 / 2e-132 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 399 / 2e-130 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033936 [exp] 383 / 3e-125 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 379 / 3e-123 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 374 / 2e-121 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131500 [exp] 829 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 825 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 696 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 505 / 2e-171 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 426 / 2e-141 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 392 / 2e-128 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 387 / 2e-126 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 387 / 2e-126 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 384 / 4e-125 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 355 / 7e-114 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021673 pacid=23180303 polypeptide=Lus10021673 locus=Lus10021673.g ID=Lus10021673.BGIv1.0 annot-version=v1.0 ATGAGGCTCATCCGGGTTCAATTCCTGCATTTTTTGTTTGTTCTGATCACCTTGCATTCTCTAGCTGTAGCGGACTTGAATTCAGATAGGCAGGCTCTTC TCGGCTTTTCTGCAGCAGTACCACATTATCGTTTCCTGAACTGGACTTCTGCCTCTTCAACTTGTGACACATGGGTGGGTGTTTCTTGCAACTTGGACGG TTCTCGGGTGGTTGCACTCCGACTCCCTGGGGTTGGACTTGTGGGACCAATACCTTCCAATACTCTAGGTAAACTTGATGCCCTGAGGGTTCTCAGCCTT CGTTCTAATGCTCTTACTGGTGATCTTCCAGCAGATGTTTCCTCCCTTCCCTCCCTTCGCTCCCTGTTCCTTCAACACAATAGCTTGAATGGTGGCATAC CTACCTCCCTTTCCTCACAACTCAACATATTAGATCTCTCATTCAATAATTTCACAGGCAACATTCCCCAAACATTGTCAAATTTGACACAGCTCACTAT CTTAAATCTCCAAAACAATACGCTCTATGGAGCTATACCAGACCTGAACCGTACTAAACTCAGACATTTGAATTTGAGTAGTAACCATTTGAATGGTTCA ATTCCTTCTTCTCTTCAAAATTTCCCTAATTCTTCCTTTGCCGGAAACTCTCTATTATGTGGTTTACCTCTTGATCCCTGCTCTCCTGTCCCTCTTGCGC CATCGCCATCACCATCTCCTCCAAATGCTCCTCCTCCAGCAATCATTCCTCCTCACAAAAAAAGTTCGAAACTGAGACTGACAAAAGGACCGATCATTGC CATTGCAGTAGGAGGATTTGCAGTGCTGGTTCTCCTTGCTTTGATTGTTATATGCTGCTGTTTGAAGAAGAAAGACAATGGTGGTAGTAGCGATTCAAAG GGGAAAGCCGTTGCTGGTGCTGGCAGGGGTGACAAACCAAAAGAGGAATTTGGAAGTGGAGTGCAAACATCCGAAAAGAATAAATTGGTGTTCTTTGAAG GTTGCTCCTACAATTTTGATCTCGAGGATCTATTGAGGGCTTCAGCAGAAGTGTTGGGGAAAGGTAGTTATGGCACTGCCTATAAGGCTGTGTTGGAAGA AGCTACAACAGTGGTAGTGAAGAGGTTGAAAGAAGTGGTAGTAGGGAAGAAGGAGTTTGAACAGCAAATGGAGATCGTTGGAAGAGTCGGTCAGCATCCA AATGTCGTTCCACTCCGTGCATACTATTACTCAAAGGACGAAAAGCTCCTTGTATATGACTATATTCCGGCTGGCAGCTTGTGCACGCTTTTGCATGGGA ACAGGGGAGTTGGGAGAACGCCACTAGACTGGGAAAGCAGGATAAAGATAGCACTTAGCACAGCAAAAGGAATTGCTCACCTGCATTCAGCAGGGGGGCC GAAATTCAGCCATGGAAACATCAAGACTTCAAATGTGCTGATGAACTCCGACAATGAAGGGTGCATTTCCGATTTCGGGTTAGCGCCTCTGATGAATACC CCTATGAGTGCCTCACGAACTGTGGGGTACAGTGCTCCGGAGGTGATCGAAACACGTAAGCACAGCCACAAATCAGACGTGTACAGCTTCGGAGTGCTTA TTCTGGAGATGCTGACGGGGAAAACTCCGATTCAGTCCCCTGGACGAGGGGATGACATGGTGGATCTTCCAAGGTGGGTTCAGTCAGTGGTGAGGGAGGA ATGGACGGCAGAGGTGTTTGACGTGGAGCTGATGAGGTATCAGAACATCGAAGAGGAAATGGTGCAGATGCTGCAGATTGGCATGGCCTGCGTAGCTAAG GTGCCGGATATGAGACCGAACATGGAAGAAGTGGTTAGAATGATCGAGGAAATCCGGCAGTCGGAGTCGGAGAACAGGCTGTCGTCTGAAGATAACAAAT CCAATGTGCAGACTCCTTGA
AA sequence Show only first row Show all	>Lus10021673 pacid=23180303 polypeptide=Lus10021673 locus=Lus10021673.g ID=Lus10021673.BGIv1.0 annot-version=v1.0 MRLIRVQFLHFLFVLITLHSLAVADLNSDRQALLGFSAAVPHYRFLNWTSASSTCDTWVGVSCNLDGSRVVALRLPGVGLVGPIPSNTLGKLDALRVLSL RSNALTGDLPADVSSLPSLRSLFLQHNSLNGGIPTSLSSQLNILDLSFNNFTGNIPQTLSNLTQLTILNLQNNTLYGAIPDLNRTKLRHLNLSSNHLNGS IPSSLQNFPNSSFAGNSLLCGLPLDPCSPVPLAPSPSPSPPNAPPPAIIPPHKKSSKLRLTKGPIIAIAVGGFAVLVLLALIVICCCLKKKDNGGSSDSK GKAVAGAGRGDKPKEEFGSGVQTSEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEEATTVVVKRLKEVVVGKKEFEQQMEIVGRVGQHP NVVPLRAYYYSKDEKLLVYDYIPAGSLCTLLHGNRGVGRTPLDWESRIKIALSTAKGIAHLHSAGGPKFSHGNIKTSNVLMNSDNEGCISDFGLAPLMNT PMSASRTVGYSAPEVIETRKHSHKSDVYSFGVLILEMLTGKTPIQSPGRGDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAK VPDMRPNMEEVVRMIEEIRQSESENRLSSEDNKSNVQTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10021673 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	4.9	0.7582
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	7.0	0.8184
AT2G26680			unknown protein		Lus10043275 [exp]	13.8	0.8015
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	14.0	0.7895
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	15.5	0.7932
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	18.7	0.7669
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	25.8	0.7757
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	29.1	0.7784
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	29.7	0.7700
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	30.3	0.7509

Compare expression of checked genes

Lus10021673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.