Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38610 273 / 2e-91 RNA-binding KH domain-containing protein (.1.2) AT3G08620 271 / 2e-90 RNA-binding KH domain-containing protein (.1) AT4G26480 233 / 2e-75 RNA-binding KH domain-containing protein (.1) AT5G56140 229 / 6e-74 RNA-binding KH domain-containing protein (.1) AT1G09660 204 / 3e-64 RNA-binding KH domain-containing protein (.1.2) AT5G51300 95 / 1e-21 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035015 [exp] 513 / 0 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 359 / 7e-125 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 316 / 1e-108 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 288 / 3e-97 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 287 / 7e-97 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 219 / 4e-70 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 217 / 2e-69 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 95 / 2e-21 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132100 [exp] 298 / 1e-101 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 296 / 1e-100 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.006G111400 [exp] 288 / 1e-97 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 285 / 2e-96 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 225 / 2e-72 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 225 / 2e-72 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.003G005500 [exp] 225 / 2e-72 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 222 / 2e-71 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 96 / 1e-21 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 95 / 1e-21 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021676 pacid=23180284 polypeptide=Lus10021676 locus=Lus10021676.g ID=Lus10021676.BGIv1.0 annot-version=v1.0 ATGTCTGGCTTGTACGCTCGCAATTTCTCGCCCGCTACTGCAACTCCACCACCATCCTCCGCCGCAGTCTCACCTCACCGTCATCATCCTTACCACCAAA ACCATCTTCCTCCGAATCTGGATAACATCATGAGTGTTCAGCAGCGGCAGTATCTGGCGGAGCTGTTGGAAGAGTACAACAATCTCGGTCCTTTCACGGA GGTCCTTCCCATCGTCACTCGCATTCTCAATCAAGAGATATTGAGGGTTTCTGGAATTCCCCCTAGCCAGCACCAAGGGTTCAGCCTCTTTGGATCAACA CATCAGCAGCGCCCATCCGTTAGCCCCCACCGTAATGACGAACCATCTTGGAATTCTCTGCCTCGCCAGCGGTTTGGATCAGATGGAATGAATATGGACT GGCGTGCACCAGCAAGTCCGAATTCTCACGTTGTGAAGAAGATATTGCGTCTAGATATTCCGGTGGATAGCTACCCCAATTTCAATTTTGTGGGTCGACT CCTTGGACCCAGAGGAAACTCACTAAAGCGTGTGGAACTCTCAACTGGTTGTCGTGTCTTCATCAGAGGGAACGGCTCGATAAAGGACCCTGAGAAGGAG GACTCATTGAGGGGCAGACCAGGGTATGAGCATTTGAACGAGCCTCTGCACCTTATAATTGAGGCTGAATTGCCTGCTAACATCGTGGACCTGCGATTGA GACAAGCCACAGAGATCATAGAAGAAGTGCTTAGACCTGTGGAAGAGTCGCACGATCTGTATAAGAGGCAGCAGCTGAAGGAACTAGCACTGCTCAACTC CAATTACAGGGAAGAAAGTCCCGGACCAAGTGGTAGCGTCTCTCCTTTCACGTCAAACTCAAACATAATCGGAATGAAACGTGCTAAAACAGGTCCTTGA
AA sequence Show only first row Show all	>Lus10021676 pacid=23180284 polypeptide=Lus10021676 locus=Lus10021676.g ID=Lus10021676.BGIv1.0 annot-version=v1.0 MSGLYARNFSPATATPPPSSAAVSPHRHHPYHQNHLPPNLDNIMSVQQRQYLAELLEEYNNLGPFTEVLPIVTRILNQEILRVSGIPPSQHQGFSLFGST HQQRPSVSPHRNDEPSWNSLPRQRFGSDGMNMDWRAPASPNSHVVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVELSTGCRVFIRGNGSIKDPEKE DSLRGRPGYEHLNEPLHLIIEAELPANIVDLRLRQATEIIEEVLRPVEESHDLYKRQQLKELALLNSNYREESPGPSGSVSPFTSNSNIIGMKRAKTGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	1.0	0.9035
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	2.2	0.7939
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011816 [exp]	4.9	0.7963
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	9.0	0.7805
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	10.2	0.7821
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	14.4	0.8128
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	14.4	0.7993
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	15.2	0.7605
AT4G08330			unknown protein		Lus10025667 [exp]	16.5	0.7832
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	16.9	0.7645

Compare expression of checked genes

Lus10021676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.