Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68560 285 / 3e-89 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 251 / 7e-77 Glycosyl hydrolases family 31 protein (.1) AT5G11720 199 / 9e-58 Glycosyl hydrolases family 31 protein (.1) AT1G14990 177 / 6e-56 unknown protein AT5G63840 93 / 7e-21 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 73 / 5e-14 HGL1 heteroglycan glucosidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035019 [exp] 366 / 7e-120 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 306 / 3e-97 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 303 / 8e-96 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 293 / 3e-92 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 194 / 6e-56 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 188 / 2e-53 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10000778 [exp] 112 / 5e-31 AT3G45940 173 / 1e-51 Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 86 / 3e-18 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 86 / 3e-18 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120000 [exp] 308 / 7e-98 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 303 / 5e-96 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G129900 [exp] 183 / 3e-58 AT1G14990 210 / 6e-72 unknown protein Potri.011G154300 [exp] 197 / 3e-57 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 197 / 5e-57 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G112300 [exp] 177 / 4e-56 AT1G14990 203 / 3e-69 unknown protein Potri.011G154200 [exp] 194 / 7e-56 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 194 / 9e-56 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 84 / 6e-18 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 84 / 8e-18 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10021679 pacid=23180308 polypeptide=Lus10021679 locus=Lus10021679.g ID=Lus10021679.BGIv1.0 annot-version=v1.0 ATGATGCTTGCCAGTGGGATCAAAGAGATACTGAACGTTCAGAAGTTTCGTAGAGTAGTCTCGTACACAGGATTCTATGTCTTCACTGCTGTCCTTACCT ATGTATATACCAATAATACAACTAGAGCAGGTTTCTCTAGGGATGATCAGTTTTATGCGGCGTATCCTGCTGGAACTGAGCTTTTAACTGACACGGCCAA GTTGTACAAAGCAGCCCTTGGCAGTTGCTTCGAAGTAGACGAATGGGGTCCAGTTGAGTTCTGCGTCATGTCTAAGCATTTTGATCGGCAGGGGAAATCA CCATATGCATATCACGCGGGGTTCTACCCTGCCCCGACAAAGGACCTCTGCAAACGTTGGATAGAACTCGGTGCGTTCTATCCATTTTTTAGGGACCACT CTAACGTGGCATCCCCGAGCCAGGAGCTTTACATCTGGGGATCGGTGGCCGAATCCGCAAGGAATGCTCTTGGCTTGCGGTACAAGCTTCTTCCGTGTCT ATACACGAACTACGAGGCTCACACTGCGGGCGCGCCAATCGCGAGGCTGCTGGTCTTCTCGTTCCCGAATTATAGAGAATGTTACGGAGTGAGCATTCAA TTCTTGCTAGGTAGTAGTGTCATGGTTTCTCCCATGCTCGAGGAAGGGAAGACGCAAGTGAACACGCTCTTCCCTCCAGGATCATGGTACAACCTTTTCA ACATGTCGCACCATGCGATTAACTCGAAGGGGGAATACTTTACATTGGAGTCCCCATTGAACGTGATCAATGTCCATGTGCATCAGAACACAATTCTGCC TATGCAACAAGGCGGGTTGATTTCGAAAGATGCGAGGATGACACCGTTCACCCTCGTGGCCACGTTCCCGGTTGGAGCTAGAGAAAGTGAAGCGAAAGGG AACCTCTTCCAGAGATGA
AA sequence Show only first row Show all	>Lus10021679 pacid=23180308 polypeptide=Lus10021679 locus=Lus10021679.g ID=Lus10021679.BGIv1.0 annot-version=v1.0 MMLASGIKEILNVQKFRRVVSYTGFYVFTAVLTYVYTNNTTRAGFSRDDQFYAAYPAGTELLTDTAKLYKAALGSCFEVDEWGPVEFCVMSKHFDRQGKS PYAYHAGFYPAPTKDLCKRWIELGAFYPFFRDHSNVASPSQELYIWGSVAESARNALGLRYKLLPCLYTNYEAHTAGAPIARLLVFSFPNYRECYGVSIQ FLLGSSVMVSPMLEEGKTQVNTLFPPGSWYNLFNMSHHAINSKGEYFTLESPLNVINVHVHQNTILPMQQGGLISKDARMTPFTLVATFPVGARESEAKG NLFQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10021679 [exp]	0	1
AT4G22000			unknown protein		Lus10001488 [exp]	16.1	0.8175
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	19.7	0.8225
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	21.6	0.8190
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	21.7	0.7848
					Lus10018566 [exp]	32.2	0.8062
AT5G65880			unknown protein		Lus10039652 [exp]	33.0	0.8086
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	33.2	0.8161
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	35.0	0.8100
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10007820 [exp]	39.5	0.7934
AT4G10540			Subtilase family protein (.1)		Lus10031097 [exp]	39.5	0.7774

Compare expression of checked genes

Lus10021679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.