Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54440 1180 / 0 CLUB, AtTRS130 CLUB (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G123900 [exp] 1263 / 0 AT5G54440 1980 / 0.0 CLUB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF11817 [flax] [poplar] Foie-gras_1 Foie gras liver health family 1
Representative CDS sequence Show only first row Show all	>Lus10021680 pacid=23180294 polypeptide=Lus10021680 locus=Lus10021680.g ID=Lus10021680.BGIv1.0 annot-version=v1.0 ATGGCCAACTACCTTGCTCAGTTTCAAACCATCAAGAACTCGTGCGATCACATCGTAATTGCAGTGGAAGATGTAAGTGATTTGTGGCCCAGTATCAAAG ACAGATACGAGGAGAGATTACCATTTAGAAGAGCTTGTTTGAACAACAAGACACGGGATCCTGTTTTTGTGGAGAGTTTGAATGCCGAATTCATATTGAC AACAGACGCAAGACTTCGCAGTCGGTTTCCACAAGAACAATCATTGTTTTGGTTTCGAGAGCCTTATGCGACGGTGGTTCTTGTTACATGTGAGGATCTC GATGAGTTCAAAACCATCCTTAAACCCCGCCTGAAACTGATAGTCCAAAATGACGAGCGGGAATGGTTTATTGTATTTGTGTCTCGAGCTCATCCAAGCA ACGATTTTGCAACCAAGATGCAACTAAGTCAGCCAAAAAGGTATACGAGAAGGTGCAAGTTGAATTCAGCTCGAAGAAAAGGGAAAGTTGATCAGCAGTT TCAGATAAATGTAATACTAAGGTGCTGCAAATATGATATCCATGGCCCTGAAGCGTTATTCTGGGAAGACTTGGAATCGAAAATTATGGAGTGCGTCAGA AATACATTGGATAGGCGTGTACAGTTTTATGAGGATGAAATACGTAAACTAACTGAACAGAGGTTCATGCCAGTTTGGAACTTCTGCAACTTTTTCATAT TGAAGGAAAGTTTGGCTTTTATGTTTGAGATGGCCCATCTTCATGAAGATGCAATGCGCGAATATGATGAACTAGAACTATGCTACTTAGAAACGGTTAA TATAACGGGAAAGCAAAGAGACTTTGGAGGTGTTGAACATGGTGATGATCATGCAGCGCTGTTGAATCCTGGGAATAAACCACTCTCTCAAATTGTACAA GATGACTCCTTCAGGGAATTCGAATTTAGACAATACCTATTTGCTTGTCAATCAAAGCTTTTGTTTAAGTTGAATCGCCCTTTTGAAGTTGCATCAAGGG GCTATTCATTTATAATCAGTTTTTCAAAGTGTCTCACATTACATGAGCATAAATTACCGTTTTGTATGCGCGAAGTTTGGGTGATAACAGCATGTTGGGC TTTAATAAATGCAACTTCATCTGAATATAAAGATGGACTTGTGGCACCAGACATAGAGAAGGAGTTCTATCGACTTCAGGGTGATCTTTTTTCATTAGGC CGTGTGAAGTTCATGAGGCTTGCATATTTAATTGGGTATGGGAATGAAATAGAAAGAAGCCCCGTGAACAGTGCTTCTCTCAGCATGCTGCCTTGGCCCA GGCCTTCAGTTTGGCCATCGGTTCCGACTGAAGCTTCATCTGAGGTGCTTGAGAAGGAAAAGCTGATCCTCCAAACGACATCCGAGACTAAGCATTTTGG TATTCACAGAAAAGAATTGCCTCTTGAACCCACTGTGCTTTTGCGTGAGGCTAATCGGCGGAGGGCATCACTTTCTGCTGGCAATGTTTTTGAAATGTTT GACGGTCGCCCAAGTATCACTGATGGATCAGGTCCGGATGGTCCATTAAAATCACCACAACAACAGAAGGGAAGTCTCATCTCTATGTCGCGAACTTACT CTTCTCCTGGTTTTGACGGGTCACCAGATAGACCTATGAGAATTGCAGAGATACATGTAGCTGCCCAGCATGCTTTGCAAGACATAATTTCAGACACAGA GTTGCTAAGAACTTTGTCATCTGTAGAGGAATTCGAGCAAAAGTATCTAGAGCTAACGAAAGGTGCTGCTGACAATTATCATCGTTCCTGGTGGAGAAGG CATGCTGTTGTCCTTGATGGTGAGATTGCAGCTGTTTGTTTCAGGCATGGAAACTTTGACCAAGCTGCAAAGTCATATGAGAAGGTCTGTGCCCTTTATG CTGGAGAAGGATGGCAGGAGTTGTTGGCTGATGTGTTACCAAATTTGGCCGAATGTCAGAAGATGTTAAATGATCAGGCTGGCTACCTGTCTTCTTGCAT CCGACTGCTGTCCCTGGATAAAAGTTTATTCTTGAACAAAGAGCGCGAGGCTTTTCAAGCTGAACTTGTTCGCCTTGCACATAGCGAGTTGAAAGATCCT GTTCCTTTGGATGTGTCATCATTGATTACCTTTTCAGGAAACCCTGGACCTCCTCTGGAGTTGTGTGACGGGGATCCTGGTACTCTGTCTGTCACTGTAT GGAGTGGGTTTCCTGATGATATGACTCTTGATGCGCTAAGTATCACTTTGATGGCAACATTTCATGCTGATGTAGGTGCCAAGGCGGTGAGGAGCTCTAC CATTGTGCTAAAGCCTGGAAGTGAGGAGCTCTACCACTGTGCTAAATCCTGGAAGAAACAGCATTACTCTCTCTTTGCTTCCACCGAAACCCGGCTTCTA TGTCCTAGGTGTTCTTACAGGACAAATTGGTCAGTTGAGGTTCAGATCCCATAG
AA sequence Show only first row Show all	>Lus10021680 pacid=23180294 polypeptide=Lus10021680 locus=Lus10021680.g ID=Lus10021680.BGIv1.0 annot-version=v1.0 MANYLAQFQTIKNSCDHIVIAVEDVSDLWPSIKDRYEERLPFRRACLNNKTRDPVFVESLNAEFILTTDARLRSRFPQEQSLFWFREPYATVVLVTCEDL DEFKTILKPRLKLIVQNDEREWFIVFVSRAHPSNDFATKMQLSQPKRYTRRCKLNSARRKGKVDQQFQINVILRCCKYDIHGPEALFWEDLESKIMECVR NTLDRRVQFYEDEIRKLTEQRFMPVWNFCNFFILKESLAFMFEMAHLHEDAMREYDELELCYLETVNITGKQRDFGGVEHGDDHAALLNPGNKPLSQIVQ DDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYSFIISFSKCLTLHEHKLPFCMREVWVITACWALINATSSEYKDGLVAPDIEKEFYRLQGDLFSLG RVKFMRLAYLIGYGNEIERSPVNSASLSMLPWPRPSVWPSVPTEASSEVLEKEKLILQTTSETKHFGIHRKELPLEPTVLLREANRRRASLSAGNVFEMF DGRPSITDGSGPDGPLKSPQQQKGSLISMSRTYSSPGFDGSPDRPMRIAEIHVAAQHALQDIISDTELLRTLSSVEEFEQKYLELTKGAADNYHRSWWRR HAVVLDGEIAAVCFRHGNFDQAAKSYEKVCALYAGEGWQELLADVLPNLAECQKMLNDQAGYLSSCIRLLSLDKSLFLNKEREAFQAELVRLAHSELKDP VPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDMTLDALSITLMATFHADVGAKAVRSSTIVLKPGSEELYHCAKSWKKQHYSLFASTETRLL CPRCSYRTNWSVEVQIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	0	1
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	1.0	0.9671
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	3.5	0.9560
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	3.5	0.9579
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	3.9	0.9573
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	4.5	0.9545
AT3G27325			hydrolases, acting on ester bo...		Lus10014564 [exp]	4.6	0.9349
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	4.9	0.9532
AT5G16210			HEAT repeat-containing protein...		Lus10028491 [exp]	5.2	0.9240
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	6.7	0.9478
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	8.0	0.9487

Compare expression of checked genes

Lus10021680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.