Plant FIBer expression Database

Lus10021681 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54440 566 / 0 CLUB, AtTRS130 CLUB (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008809
[exp]
105 / 4e-27 ND /
Lus10030094
[exp]
41 / 0.0009 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G123900
[exp]
665 / 0 AT5G54440 1980 / 0.0 CLUB (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0212 SNARE PF12584 TRAPPC10 Trafficking protein particle complex subunit 10, TRAPPC10
Representative CDS sequence
>Lus10021681 pacid=23180316 polypeptide=Lus10021681 locus=Lus10021681.g ID=Lus10021681.BGIv1.0 annot-version=v1.0
ATGAGCTATGAGAAGCCAACTAGACCTATTTTGAAGGTTTTTGAACCAAGAGCTCTGGTTGATCTTGCTGCTGCTATTTCTACACCTTTGCTTATAAATG
AGATTCAGTGGGCTGGGATCGTGGTACGTCCAATCGATTATTCCTTAAAAGGTGCTGTATTGCACATAGATACTGGCCCAGGTCTGAGGATCGAGAACTC
TCTTGTCGTTGAGATGGAAAGCTGTGCCAATTTGTCACAAAATGACCCTGATACACCAACCTCTGGTGCCCGTCAAAATGGTAGCCCTGCTTCTCATAAG
CAATTGGATCAATTAAGTCTTGAGGATGGCAAAATGACATTTCCTGATTGGGCTAGTGATATGGATTGTATTATATGGGCTCCCATTTGTGCTGAAAGTG
ACGGTCTTCCAAGGGGATCATCTTCAGTTGCACCCCAGAAACCAAACATGGTGGATGGGATGAGAACAATTGCTTTGAAACTGGAGTTTGGAGCATCACA
TAACCAGATCTTTGAAAGGACTATAGCTGTGCATTTCAGCCATCCTTTCCATGTTAGCAGCCGTGTTATTGACAAATGCAATGAAGGAACTCTACTTTTG
CAGGTGATCCTGCAGTCCCAAGTTAAGGCCACTTTCACAGTATATGATGCTTGCCTTGAACTTCAAGATGGTTTTGTTCATGCTGGGCGTGGTGATGGAC
GCCCAACTTTGGGTTCTTTCCCTCTTGCAATTTCTCCAACCTCTAAAGGGGGGATCATTTTCAACATCTCCTTGGGGAAGACAGCTGGAAAAGATGACAG
TGGTGGAGGAAAGCCAGAGAGTATATTGAACATCAGATATGGAATTTCTGGTGACAGAACCTGTGGAGCGCATGCTCCAGTGACTGTGGAATCTTTTTTA
TCTGATGCTACCAAGAAGGACCTGACGTTCAGAAGTGTTCTTGTGCTGGAAAGGCCTGTTGTGGACCCTTGTATGGCCGTTGGTTTTCTTCCCCTTCCTT
CAGATGAACTCAGAGTTGGGCAACTTGTTACAATGAAATGGAGAGTTGAAATGTTGAAAGATTTGGAGGACAAAGAAATTTCGGAACACAATGGTGAGGT
GCTGTATGAAGTGAATGCAACGCCTGAAAATTGGATGATTGCTGGAAGGAAAAGGGGATATGTTTCTCTGTCCAGAAAACAAGGTTCAAGGATAGTTATA
TCAGTGCTGTGTATACCTTTAGCTGCTGGTTATATCCGGCCTCCTCAACTAGCACTGCCTGATGTTGCTGAATCGAATATAAGCTGCAACCCTCCTGGAC
CTCATCTGGTTTGCATAATGCCTCCAGCTCTCAGCTCTTCATTCTGCATTCCAACGGAAGTTGATTTCGTTGTCACGGAGGATATCAGGCAAGGGGCCAG
GATGAACAGGTGTGAGTATCTTGCACCAAGAGGTGTCATTATCCTAAAGGATAGACTTGTAGGCAACAACCATGAAGTCCCTACGGGTTTTGGAGGGAAA
ACAACTCAGAAAGAGTTTGAATCAAACGAAAGGGTGTGTGCCCATTCGTCCTATGTGGGAGTGTTACCACTCCAACTACCTAGCTCCCCACCTTCACTCC
AGCTCAACTCAGTACCGCAGCTAGTGACACTATCATCCAGCTCAAGGTTGAGCTGA
AA sequence
>Lus10021681 pacid=23180316 polypeptide=Lus10021681 locus=Lus10021681.g ID=Lus10021681.BGIv1.0 annot-version=v1.0
MSYEKPTRPILKVFEPRALVDLAAAISTPLLINEIQWAGIVVRPIDYSLKGAVLHIDTGPGLRIENSLVVEMESCANLSQNDPDTPTSGARQNGSPASHK
QLDQLSLEDGKMTFPDWASDMDCIIWAPICAESDGLPRGSSSVAPQKPNMVDGMRTIALKLEFGASHNQIFERTIAVHFSHPFHVSSRVIDKCNEGTLLL
QVILQSQVKATFTVYDACLELQDGFVHAGRGDGRPTLGSFPLAISPTSKGGIIFNISLGKTAGKDDSGGGKPESILNIRYGISGDRTCGAHAPVTVESFL
SDATKKDLTFRSVLVLERPVVDPCMAVGFLPLPSDELRVGQLVTMKWRVEMLKDLEDKEISEHNGEVLYEVNATPENWMIAGRKRGYVSLSRKQGSRIVI
SVLCIPLAAGYIRPPQLALPDVAESNISCNPPGPHLVCIMPPALSSSFCIPTEVDFVVTEDIRQGARMNRCEYLAPRGVIILKDRLVGNNHEVPTGFGGK
TTQKEFESNERVCAHSSYVGVLPLQLPSSPPSLQLNSVPQLVTLSSSSRLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54440 CLUB, AtTRS130 CLUB (.1) Lus10021681
[exp]
0 1
AT1G34130 STT3B staurosporin and temperature s... Lus10017990
[exp]
1.4 0.9448
AT5G08160 ATPK3 serine/threonine protein kinas... Lus10034642
[exp]
2.4 0.9326
AT5G08160 ATPK3 serine/threonine protein kinas... Lus10035273
[exp]
2.4 0.9343
AT1G26460 Tetratricopeptide repeat (TPR)... Lus10026663
[exp]
4.0 0.9170
AT4G09160 SEC14 cytosolic factor family ... Lus10009458
[exp]
6.2 0.8965
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Lus10003546
[exp]
7.4 0.8576
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Lus10015176
[exp]
7.5 0.9063
AT4G34450 coatomer gamma-2 subunit, puta... Lus10026336
[exp]
8.7 0.9106
Lus10007580
[exp]
8.8 0.8991
AT5G38640 NagB/RpiA/CoA transferase-like... Lus10027234
[exp]
9.6 0.8847

Lus10021681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.