Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62270 400 / 4e-139 unknown protein AT2G02880 110 / 2e-27 mucin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035022 [exp] 585 / 0 AT5G62270 425 / 6e-149 unknown protein Lus10034311 [exp] 552 / 0 AT5G62270 447 / 3e-157 unknown protein Lus10030486 [exp] 115 / 5e-29 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10012838 [exp] 110 / 2e-27 AT2G02880 346 / 4e-119 mucin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133900 [exp] 387 / 1e-133 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 288 / 2e-95 AT5G62270 241 / 7e-77 unknown protein Potri.015G004400 [exp] 119 / 4e-31 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.012G021000 [exp] 66 / 5e-13 AT2G02880 161 / 6e-50 mucin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021682 pacid=23180321 polypeptide=Lus10021682 locus=Lus10021682.g ID=Lus10021682.BGIv1.0 annot-version=v1.0 ATGCACAGGTTTCACCATCTCCTAACTCGACTATCTTCAACCACACTCCACACTAGTCGATCATTTCGTCCCCAGACAAGTCAATTCATTACGACCTGTG GCTTCTCTTCTGAGTCGGGAAACGGTGGCGGTGGAAGCGAAGGAAATGATGAATGGGCAAATGCTCCCGGAAGCGGGACATTTGGTCAGACTGCATCTGA TGATCTAGGTTGGGACTCCGTTTCATCATGGTCGACTGGATTGACCAAGGATCATTTCAACGGTGAGACGGTGGGGAAGATGGCTAGTTCGTCTTCTTCA TCTTCACAGTCTCCTGTGATATCTGAGCTGCAAGAGATTGACGATAGGATAAAAGAACTGGATGCTGAAAACAGGAAGGGGAAATTTTTCGTTGATGGAT GGGAGCAGAGATTGCTGGAGACAAGTGTGCTGTTGAAGCAAGTGGAGGAGCCTGGGGCGAGAGGATCCTACCTTAAGGATTCAGAGAAGGCAGAGATGTA TCGGTTGCACAAGGAGAACCCTGAAGAGTACACTGTTGAGAGGCTTGCTAAGGATTACAGGATTATGAGACAGAGGGTGCATGCCATTCTCTGGCTCAAG GAAGAGGAAGAGGAGGAGAGAAAGCGTGGTCGTGTTTTGGATGACTCAGTTGAATTGTTACTTGATACCTGCCCAGAATTCTTCAATTCCCATGACCGGG AATTTCATGTAGCATCCCTTCCTTACAAACCTGATTTCAAGGTGATGCCAGAGGGATGGGATGGTACTATTCGTGATCCAGATGAAGTTCACTATGAGAT ATCCAAGAAAGAGGATGACATGCTTTACCAAGAGTTTGTCCAGAGGATGGAATTCAACAAAATGAAAATTGCTGGAATGGTGAAGTGCCATAAGTACAGT AGGCGGCGCCCATCTGAAGGCTGGAACTTCACAGTGGAGAAAATGGGAGCTCAAGGGAAACGTGGAGGTGGGGGTGGCTGGAAGTTTGTAAGCTTGCCAG ATGGATCTAGCCGACCTCTAAACGAGACAGAGAAGGTATACGTGAAAAGAGAGACTCCACGACGGAGGCGCAAGATTTTCCCTTGA
AA sequence Show only first row Show all	>Lus10021682 pacid=23180321 polypeptide=Lus10021682 locus=Lus10021682.g ID=Lus10021682.BGIv1.0 annot-version=v1.0 MHRFHHLLTRLSSTTLHTSRSFRPQTSQFITTCGFSSESGNGGGGSEGNDEWANAPGSGTFGQTASDDLGWDSVSSWSTGLTKDHFNGETVGKMASSSSS SSQSPVISELQEIDDRIKELDAENRKGKFFVDGWEQRLLETSVLLKQVEEPGARGSYLKDSEKAEMYRLHKENPEEYTVERLAKDYRIMRQRVHAILWLK EEEEEERKRGRVLDDSVELLLDTCPEFFNSHDREFHVASLPYKPDFKVMPEGWDGTIRDPDEVHYEISKKEDDMLYQEFVQRMEFNKMKIAGMVKCHKYS RRRPSEGWNFTVEKMGAQGKRGGGGGWKFVSLPDGSSRPLNETEKVYVKRETPRRRRKIFP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62270			unknown protein		Lus10021682 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10012113 [exp]	1.0	0.9171
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Lus10020221 [exp]	1.4	0.8831
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	8.2	0.8713
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	12.8	0.8699
AT4G24760			alpha/beta-Hydrolases superfam...		Lus10042075 [exp]	18.4	0.7993
AT3G07425			unknown protein		Lus10020406 [exp]	19.3	0.8698
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	20.3	0.8101
AT3G16780			Ribosomal protein L19e family ...		Lus10016829 [exp]	20.9	0.8804
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	21.4	0.8187
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	23.8	0.8075

Compare expression of checked genes

Lus10021682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.