Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26000 512 / 9e-180 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G42160 304 / 4e-98 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G27160 75 / 4e-16 unknown protein AT1G72220 50 / 2e-06 RING/U-box superfamily protein (.1) AT4G17905 45 / 4e-05 ATL4H RING/U-box superfamily protein (.1) AT1G72310 45 / 5e-05 ATL3 RING/U-box superfamily protein (.1) AT2G47560 45 / 6e-05 RING/U-box superfamily protein (.1) AT2G39100 44 / 0.0001 RING/U-box superfamily protein (.1) AT3G20630 44 / 0.0002 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) AT3G03550 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035023 [exp] 710 / 0 AT2G26000 631 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10038095 [exp] 325 / 3e-106 AT2G42160 684 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10006651 [exp] 319 / 7e-104 AT2G42160 674 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10005617 [exp] 47 / 3e-06 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10017253 [exp] 45 / 2e-05 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10024635 [exp] 44 / 7e-05 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10000333 [exp] 45 / 9e-05 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10002706 [exp] 45 / 0.0001 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10032270 [exp] 44 / 0.0001 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110500 [exp] 558 / 0 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.007G063900 [exp] 542 / 0 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.018G128100 [exp] 320 / 4e-104 AT2G42160 621 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Potri.003G184800 [exp] 49 / 2e-06 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.017G038300 [exp] 47 / 9e-06 AT4G26400 68 / 2e-13 RING/U-box superfamily protein (.1.2) Potri.009G090100 [exp] 46 / 9e-06 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G075200 [exp] 44 / 4e-05 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 45 / 5e-05 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 45 / 5e-05 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 45 / 6e-05 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10021683 pacid=23180351 polypeptide=Lus10021683 locus=Lus10021683.g ID=Lus10021683.BGIv1.0 annot-version=v1.0 ATGTCTTCCCAATCGAAGTTCACAGACATGTCCTCTACAAGCTCAAGCATGTCAATTCCTGGAGGAAGCTCGCCTCCCGATCACTTGCGGCAACCAGTTT CTGCCGTCGTCTCCGGCGACACTATAGAAACCTCCCCATCAACTTCGTCTTCCACTACTCGGACTCAAACCTTCCATTTTTCCTCCGGAAACCCCAGGAT CGAAGAGACGCGAGGGATCATGCATCTTTTCTCTGAAGACTCTCCTTCCCATCTTCCTATTGGAAGGAAGCCTCTAGTTTCGGTGATTGGGGTGCCAAAT CACATGACGTATGCTGATTTTTGCAAGTTCTGTGGCTCTTTTACTCGAAACATCTTGGAGATGCGGATCGTCAGAGAATTCAACTCTTTAGAGGAAGAAG TTTGTCGCGTTTGTTTTACCATTGATGTGCAGTTCACTGGTTATAGTGGTTCTCTTGAACATAGTCAGCATTCACCAACAAGCACAGCTGAGCAGTCTTC TTGTCCAGTTTGTCTCGAGAGACTAGACCAAGACATGGGTGGAATTCTTACAACCATATGCAATCATTCATTTCACTGCTCTTGCATCTCAAAATGGGCT GACTCATCTTGCCCAGTTTGTCGATATTGTCAGCAACAGCCGGAGAAATCTGTATGTTTTATATGTCAGACTTCTGAGAATCTATGGATGTGTGTAATCT GCGGTTTTGTTGGTTGTGGAAGGAATATGGAAGGACATGCTGTAAGACATTGGAAAGAAACAGAACACTGCTATTCTCTTGAATTGGAAACACAGCGAGT ATGGGATTATGCCGGTGATAATTACGTTCACAGACTAATTCAATCAAAAACTGATGGAAAGTTAGTTGAGTTGCATACCCATTGTGCGCGTGCTGGTGAT GGTTGTAGCTGTGTGAACTCAGGAATCAATGAGACTCTGTTAGGCAGCAAAGTTGAAGCATATGTTGATGCAACGTTATTGGATTGCTGTGTGCAGATTG TTAGTGAGTATGATGAACTCCTGGCTACGCAACTTGAAAACCAGAAGCAGTATTTTGAGACTTTACTACAAGAGGTGAAGGAAGAAACTGATAGAAAAAA GTCTGAAGCTGTTAAGAAGGTTGTCAATTCAAAACTACAAAAATTACAGGCCAGGTTTGAAAAATGTACCAGGGAGAAGAAGTTTCTTGATGAACTCAAT GAAAATCTGCTGAAAAACAAGGAGATCTGGAAAGTGAAGATAGCTGAGATGGAGGAGAGAGAGAAAAAGGCTCTGAAGTTGAAGGATGACAAAATCCAGA TACTGGAAGTACAGCTTCAAGATTTAATGGCTCGGCTAGAGGTCGGGAACACCCCAGTTGAGGAGGATGAAACAGCAGCAGCAGCAGCAGTTGCTGAACC TGTACAATCAAACTCTTCAGCTAAGACAAATGGTAGGAAAAAGGGGCAAGTGATTTGA
AA sequence Show only first row Show all	>Lus10021683 pacid=23180351 polypeptide=Lus10021683 locus=Lus10021683.g ID=Lus10021683.BGIv1.0 annot-version=v1.0 MSSQSKFTDMSSTSSSMSIPGGSSPPDHLRQPVSAVVSGDTIETSPSTSSSTTRTQTFHFSSGNPRIEETRGIMHLFSEDSPSHLPIGRKPLVSVIGVPN HMTYADFCKFCGSFTRNILEMRIVREFNSLEEEVCRVCFTIDVQFTGYSGSLEHSQHSPTSTAEQSSCPVCLERLDQDMGGILTTICNHSFHCSCISKWA DSSCPVCRYCQQQPEKSVCFICQTSENLWMCVICGFVGCGRNMEGHAVRHWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELHTHCARAGD GCSCVNSGINETLLGSKVEAYVDATLLDCCVQIVSEYDELLATQLENQKQYFETLLQEVKEETDRKKSEAVKKVVNSKLQKLQARFEKCTREKKFLDELN ENLLKNKEIWKVKIAEMEEREKKALKLKDDKIQILEVQLQDLMARLEVGNTPVEEDETAAAAAVAEPVQSNSSAKTNGRKKGQVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	0	1
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	2.0	0.8439
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	6.6	0.8313
AT3G48860			unknown protein		Lus10032546 [exp]	9.0	0.8372
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	12.4	0.8247
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	14.1	0.8161
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	14.3	0.8409
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	15.6	0.8110
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	19.3	0.8193
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	19.5	0.8125
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	22.6	0.8054

Compare expression of checked genes

Lus10021683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.