Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021816 [exp] 599 / 0 ND / Lus10021528 [exp] 588 / 0 ND / Lus10038678 [exp] 566 / 0 ND / Lus10010826 [exp] 550 / 0 ND / Lus10002071 [exp] 548 / 0 ND / Lus10024215 [exp] 547 / 0 ND / Lus10015042 [exp] 546 / 0 ND / Lus10010604 [exp] 543 / 0 ND / Lus10003781 [exp] 529 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021684 pacid=23180324 polypeptide=Lus10021684 locus=Lus10021684.g ID=Lus10021684.BGIv1.0 annot-version=v1.0 ATGTTGTCTTCTCTAGCTCGGAGCCATGTACTCTTCATTAACGATCATATGCGTAGTTGTGAACATCAGGCTTTTTATCTTGAATCTTTCATTGATCGTC CTATTCTTCCATCTGTTCATGTCGATCCAGCCTCCTTTGATCGTTATGGTCTTAATCCCTCTGCTCTTATTGGGAATCTTGGATGGGGGTCTCTTGCCCT CCATCAACGTCATCAGTTCTTCCCTGCTGCAGTTCGACAATTCTATGTTAACCTACAGCTGGAAGGCTCTCTACAGGACGGGCGATTCAGTACCATCGTT GCAGGATATCGCATTGTAATCACTCCTCGACTCCTCTCAACTGTTCTTGGAATTCCTTCTGGGGGTGCTTCAATTTTTCATGACTCTGATCTCTGTAAAA TTCCCTTTGATGCTTCTGTTGTCCTTGCTCGATGGACCAATGCTCCTCCTACAGCTCGACCTCTCTCCATCATCTCCATGCTGTCCGACTATTTGAAAGT CCTTCATTTCTTTATTACCAGGGTCTTTCTTCCTCGATCAGCTGGGAAATTTCTAGTTACGAGTCTGGACACTTGGATCATGCATTGTGCCATCTTCAAT TTTCAAACAGATTACAGCTGCCTAATGTTTGCTTCTATGGTTTCTTATGGGAATCGTGCCTTTCCTGGAGATCTTCCTTTTGGGCCTGACATCTCCTATC TTCTCTATGCCCTCGGTGTCCCTATTCATGGTGTTTTTTCTCTTGAGGCTCCTCTGCACAATCTTCGTCCGAGTCACGTGCTTCGTGAAGTTGGTTGGGA TCATCTTCAACCTGCCTCTGGCTCAGGGGGAGAACCTCTTCATGACCTCAACTTTTCAGACGATGAAGTAGATAACCTTGCGAATGAGATTGAACGAAAC CTGGAAATTCAGGAAGGCCTTGATGCAGCTGGTGCTGATGATCTTTCTCTGTCTAGTCATTCTCCAACCAGTGGCATGTAG
AA sequence Show only first row Show all	>Lus10021684 pacid=23180324 polypeptide=Lus10021684 locus=Lus10021684.g ID=Lus10021684.BGIv1.0 annot-version=v1.0 MLSSLARSHVLFINDHMRSCEHQAFYLESFIDRPILPSVHVDPASFDRYGLNPSALIGNLGWGSLALHQRHQFFPAAVRQFYVNLQLEGSLQDGRFSTIV AGYRIVITPRLLSTVLGIPSGGASIFHDSDLCKIPFDASVVLARWTNAPPTARPLSIISMLSDYLKVLHFFITRVFLPRSAGKFLVTSLDTWIMHCAIFN FQTDYSCLMFASMVSYGNRAFPGDLPFGPDISYLLYALGVPIHGVFSLEAPLHNLRPSHVLREVGWDHLQPASGSGGEPLHDLNFSDDEVDNLANEIERN LEIQEGLDAAGADDLSLSSHSPTSGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021684 [exp]	0	1
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	1.7	0.8469
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	8.4	0.8028
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	9.9	0.7652
					Lus10032314 [exp]	10.4	0.7456
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	11.0	0.6721
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	17.5	0.6394
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	18.7	0.7251
AT5G49350			Glycine-rich protein family (....		Lus10034447 [exp]	24.0	0.6507
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	27.9	0.5926
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	29.5	0.6568

Compare expression of checked genes

Lus10021684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.