Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25840 711 / 0 Protein kinase superfamily protein (.1.2) AT1G13350 639 / 0 Protein kinase superfamily protein (.1.2) AT3G53640 591 / 0 Protein kinase superfamily protein (.1) AT1G73460 166 / 2e-41 Protein kinase superfamily protein (.1) AT1G73450 165 / 2e-41 Protein kinase superfamily protein (.1) AT4G32660 155 / 5e-41 AME3 Protein kinase superfamily protein (.1.2.3) AT2G40120 160 / 6e-41 Protein kinase superfamily protein (.1) AT4G24740 154 / 3e-40 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G17750 161 / 5e-40 Protein kinase superfamily protein (.1) AT3G53570 151 / 8e-39 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035031 [exp] 1261 / 0 AT3G25840 465 / 6e-151 Protein kinase superfamily protein (.1.2) Lus10035032 [exp] 191 / 2e-55 AT3G25840 171 / 4e-49 Protein kinase superfamily protein (.1.2) Lus10040203 [exp] 166 / 4e-42 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 163 / 1e-41 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 159 / 1e-39 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 157 / 6e-39 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 156 / 1e-38 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10024431 [exp] 150 / 2e-38 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 147 / 1e-37 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126900 [exp] 808 / 0 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 761 / 0 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G039700 [exp] 167 / 5e-42 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 163 / 2e-41 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 157 / 3e-41 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G188400 [exp] 162 / 5e-41 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 163 / 1e-40 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.016G079900 [exp] 152 / 2e-39 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 150 / 1e-38 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 145 / 4e-37 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021688 pacid=23180350 polypeptide=Lus10021688 locus=Lus10021688.g ID=Lus10021688.BGIv1.0 annot-version=v1.0 ATGGCAATCGACGGCGATGCCTCTCTCCGGAAGCAGAGTCGATCGCCCTCCGAGGATGAGTTGGAGAAGTCTTCTAAGCGGCGCAAGCACCGCCACCGTC ATCGTCACCACCGTAGCAAGAAGCACGGTGAGGAAACCGAGGTAGCCGGCAAGGAAGATGCTCCTCATCCACCTTCTCCGGCTACTCTTCCTCTTAATAC GGCTGACTATGACATTGAAGAAGGAGAAATTCTCGATGAGGAAGGGTCTGGTGCTGGTGATCTTAATGATGCGGAAACAGGCAAGGACATTGATGATTCT GAAAATCTGGGACAAAATCTTGATGAGAAGGGTAGTAGTTTCATGGCCAATTCTCGAGTTGAGGAGAAACATGTAAAGTATGCTAGTCTGAGTAGTAATA AGGCTAGAGATCAAGATAACTGGTCTTCTGAGCATGATCCACAATCTAAGATCCATGGAAGCTTAAGCTATTACCGAACAGGATCTAAGTCTCCTTGCCA TTTAGGTCTGAAGCAAAAGATCAACCATGGCACGAATGATGATAGGGAGGACTATTCAAGTGATGTTAGGTGTGCTTTGGGAAATGGTCAGGATTTATAC AATCAAAAAGCTCGATCAGAATCAAGGGACAAGCATCATGTTAAGAGAAGATCTAAATCGCGTGATCAAGGGAGAGAAAGATCTCATTCCCACAGTGGGC TAGAAGATGAGGATCACTGGAAAAGGAGGCGGCGCCATGAAAATATTGAAAAGGATTCCGGTGATGAAAGAACAAGCAGGGGCAGTAGAGATGTTCGCTC AAGTAGAGATTATGGTCGGGAGAGGGATAGAGAATCTAGCGTTAGCTATAGTAGGTACCAAGGGCGGGATGACAGATATCGCCACCGTGACGCTTATGAC AACGATAGAAGTAGGGAGAGAGAGATGGATGGGGATCGAAGGAAGGAGAAGGAAAGAGAAAGAAGCCGGGATCGGGAGACCTACATAGATCGAAGGAAGA CTCTGGAAAGAGAGAGGAGCCAAGAGAGGGAGGGTGACAGAGATAGAAGGTGGGAGAAAAGGCATGGACGTAGTAGGGATATGGATATGGAGCGTGAAGA AAAGAGGGACAGGGAACCGGATCCAGATAAGAGAAGAGAGAGAGAACATGAGATAGGTAAGGAGCTTGATTGGAGGCAGAAGGCAAGAGGCAGAGAGGAT AGATATATGGAGAGGGACAGAGGCTCAAATCAATTTATGGAAAGGGACAGAAGCAAAGATAAGGAAGGCGGTAAATACCGGGAACGAGATAGGGAATATG ATCGTGAGCGTGAAAAGGGGCTTGAATGGAAAACTCAAAGGAATAGTGGAAAGGATAGAGGTGGAAAGAGTGATTCTGCAAATTTCCATGGTGCTAATAG TGATTCTTTTGAAAATGGCAGAGAAAGAGTAAAAAGGGATGAGGATGAACAGGAAGATTTTGAAGAGAGGATGTCACTTACACTAGCTGAGCAAGAGGAC GATGAGGTGAAAAGAATTAAAGAGGAGAGCAGAAGACGAAGTGAAGAAATTCTTGAGAAGCACCGGAAACAGCAGTTGCAGCAGGCAAGCGAGCCTGATA TAGTGGATCCGAAAAAAGATGTGGTGCTTGTGGAACAACATCCTGGGAAATCATTACCATCAAATGACAATGACATTAATCTTCGGACTGTGGAAGGTAG CAGTGATGGAAGGGATATGAATGCTGCTGCACCTTCAGTATCTATTGTGAAATCTCCAGTTCAAATTGTCCAGGTTTCTGATGATACGGTCTCACCTGGA GGACTTGGAGAAGGAACCCCCAAGAGTGAGAGATCAGAGGAACGTTACTGTGATGATATATTTGGAGACACCCCTACTACAGTTCGCAAAGTGAGCAAGG TGAATGGTTTGCCAGTAGTACGAAGTGCTCTGCATGATAACTGGGACGATGCTGAAGGCTATTACAGCTATCGTTTTGGTGAGATTCTTGATGGACGGTA TGAAATCATTGCTGCCCATGGGAGAGGAGTCTTTTCCACTGTCGTCCGAGCAAAGGATTTGAAGGCTGGAATTGATGAACCAGAAGAGGTGGCCATTAAA ATCATACGTAACAATGAAACCATGAATAAGATCTCACAGGTTGAAGTTTCAATACTCAACAAATTAGCCGGTGCCGACTTGGAGAATAGGCGCCATTGTG TTAGGTTTCTTTCGCATTTCAAGTACAGAAATCATACTTGTTTGGTTTTTGAGTCTCTTCATATGAATCTTCGTGAGATCCTAAAAAAGTTTGGTCGCAA TATTGGGCTTAAACTAACTGCTATAAGGGCATATGCCAAGCAGCTTTTCATTGCGTTGAAGCATCTTAGAAATTGTGGTGTTTTGCATTGTGACATAAAG CCGGATAATATGCTGGTGAACGAGGCAAAAAATGTGCTGAAGCTTTGCGATTTTGGCAATGCCATGTTCTCCGGAAAAAATGAAATAACCCCATACCTTG TAAGCCGCTTTTATCGCGCTCCGGAAATAACTAGCAGACACTTCCTCAGTTTGAGTCATTTTGTTGCAGTTCTTGGTTTGCCATATGATCACCCTATGGA TATTTGGTCCGTTGGTTGCTGTTTATATGAGCTTTATACCGGGAAAGTTCTTTTTCCTGGTTCAACCAATAATGATATGTTGCGACTGCACATGGAACTG AAAGGCCCTTTCCCCAAGAAGATGCTTAAGAAGGGTGCGTTTGTTGATCAACATTTCGACCATGATTTGAATTTTTATGCTACCGAACAAGATTCTGTGA GTGATAAGATTATTAAGAGGATGATTGTAAATGTAAAGCCCAAGGATATTGGGTCAGTTGTTAAAGGCTCACCAGGAGAGGATCCAAAGATGTTAGCCAA CTTCAAAGACCTTTTGGAAAAAGTTTTTATCTTGGATCCTGAGAAGAGAATGACGGTTTCTCAGGCTTTAAGCCATCCATTCATCACTGGCAAGTGA
AA sequence Show only first row Show all	>Lus10021688 pacid=23180350 polypeptide=Lus10021688 locus=Lus10021688.g ID=Lus10021688.BGIv1.0 annot-version=v1.0 MAIDGDASLRKQSRSPSEDELEKSSKRRKHRHRHRHHRSKKHGEETEVAGKEDAPHPPSPATLPLNTADYDIEEGEILDEEGSGAGDLNDAETGKDIDDS ENLGQNLDEKGSSFMANSRVEEKHVKYASLSSNKARDQDNWSSEHDPQSKIHGSLSYYRTGSKSPCHLGLKQKINHGTNDDREDYSSDVRCALGNGQDLY NQKARSESRDKHHVKRRSKSRDQGRERSHSHSGLEDEDHWKRRRRHENIEKDSGDERTSRGSRDVRSSRDYGRERDRESSVSYSRYQGRDDRYRHRDAYD NDRSREREMDGDRRKEKERERSRDRETYIDRRKTLERERSQEREGDRDRRWEKRHGRSRDMDMEREEKRDREPDPDKRREREHEIGKELDWRQKARGRED RYMERDRGSNQFMERDRSKDKEGGKYRERDREYDREREKGLEWKTQRNSGKDRGGKSDSANFHGANSDSFENGRERVKRDEDEQEDFEERMSLTLAEQED DEVKRIKEESRRRSEEILEKHRKQQLQQASEPDIVDPKKDVVLVEQHPGKSLPSNDNDINLRTVEGSSDGRDMNAAAPSVSIVKSPVQIVQVSDDTVSPG GLGEGTPKSERSEERYCDDIFGDTPTTVRKVSKVNGLPVVRSALHDNWDDAEGYYSYRFGEILDGRYEIIAAHGRGVFSTVVRAKDLKAGIDEPEEVAIK IIRNNETMNKISQVEVSILNKLAGADLENRRHCVRFLSHFKYRNHTCLVFESLHMNLREILKKFGRNIGLKLTAIRAYAKQLFIALKHLRNCGVLHCDIK PDNMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEITSRHFLSLSHFVAVLGLPYDHPMDIWSVGCCLYELYTGKVLFPGSTNNDMLRLHMEL KGPFPKKMLKKGAFVDQHFDHDLNFYATEQDSVSDKIIKRMIVNVKPKDIGSVVKGSPGEDPKMLANFKDLLEKVFILDPEKRMTVSQALSHPFITGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	0	1
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	1.0	0.8922
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	2.8	0.8164
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	6.5	0.7940
AT3G04160			unknown protein		Lus10042519 [exp]	7.3	0.7567
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	7.7	0.7542
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	11.1	0.7914
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	11.8	0.7905
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10003434 [exp]	13.3	0.6876
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	15.2	0.6850
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	15.7	0.7485

Compare expression of checked genes

Lus10021688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.