Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13330 190 / 3e-62 AHP2 Arabidopsis Hop2 homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035033 [exp] 268 / 4e-94 AT1G13330 192 / 9e-63 Arabidopsis Hop2 homolog (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118800 [exp] 215 / 5e-72 AT1G13330 357 / 2e-126 Arabidopsis Hop2 homolog (.1) Potri.010G127101 [exp] 53 / 3e-09 AT1G13330 145 / 4e-44 Arabidopsis Hop2 homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF07106 [flax] [poplar] TBPIP TBPIP/Hop2 winged helix domain
Representative CDS sequence Show only first row Show all	>Lus10021690 pacid=23180348 polypeptide=Lus10021690 locus=Lus10021690.g ID=Lus10021690.BGIv1.0 annot-version=v1.0 ATGAAAGATGCAAATGCCAAATTGCAGCAACAACTGAGTGAGCAGAAGAAGGCAGTCTCCGAGGTTGAAGGAGAAATCAAGGGTTTACAGTCAAATTTAA CTCTGGAACAGATTCGAGATAGAGAAGCCATACTGAAGGAACAGGTCAGGGAAATGGAAGAGAAATTGCAAAAAATGAGTGGTGGAGTTGCTTTGGTGAA GCCAGAGGAGAGGAAAGCTGTTAGCGAAATGTTCTCTGAGAGATTGAGCCAGTGGAGAAAACGTAAAAGGATGTTCAAAGATCTGTGGGATGCGATAACA GAGAACTCACCTAAAGATCTGAAAGAATTCAAGGAGGAGCTTGGCATGGAGTACGATGAAGATGTGGGTGTGAGTTTGCAATCATTTAGCGATCTAGCGC AGCCTGCTGACAAGCGACGAAGACTCAAATAG
AA sequence Show only first row Show all	>Lus10021690 pacid=23180348 polypeptide=Lus10021690 locus=Lus10021690.g ID=Lus10021690.BGIv1.0 annot-version=v1.0 MKDANAKLQQQLSEQKKAVSEVEGEIKGLQSNLTLEQIRDREAILKEQVREMEEKLQKMSGGVALVKPEERKAVSEMFSERLSQWRKRKRMFKDLWDAIT ENSPKDLKEFKEELGMEYDEDVGVSLQSFSDLAQPADKRRRLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10021690 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	7.5	0.8234
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	11.5	0.8112
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	13.6	0.8090
AT5G13660			unknown protein		Lus10005963 [exp]	16.0	0.8079
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	17.5	0.7486
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	17.9	0.8079
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	19.6	0.8079
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	21.2	0.8079
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	22.6	0.8079
					Lus10006164 [exp]	24.0	0.8079

Compare expression of checked genes

Lus10021690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.