Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32000 1071 / 0 DNA topoisomerase, type IA, core (.1.2) AT5G63920 287 / 4e-84 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035035 [exp] 1345 / 0 AT2G32000 1363 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10004959 [exp] 226 / 1e-62 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148800 [exp] 1143 / 0 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2) Potri.005G067100 [exp] 285 / 3e-83 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01131 [flax] [poplar] Topoisom_bac DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10021692 pacid=23180306 polypeptide=Lus10021692 locus=Lus10021692.g ID=Lus10021692.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCTGGTGTTCTTATGGTTGCAGAGAAACCCAGCATCGCTTCCTCCATCGCGTCCGTACTCTCCCATGGAAAAATGTTCACCAGGAAAGGCA GCACTGACGTCCATGAATTTGATGCCATGTTCCTTGGCTTCCCTGCCCATTACAAAGTCACTTCAGTGATTGGCCACGTTTTCAGTGTAGATTTTCCCGA GAAATATCAGAATTGGTCTACCACTGATCCTTTGGATCTTTTCCAAGTTATTGAGTGCGCCGGCTTTCAGATAAATGATGGTAGAAGAAAGATTCACCGT GCATGGTTTTCTTCAGTCACTGAGAAAGACATTTCGAAGGCAATTGATAACCTTGTTGAACCAAACAAAGATGAGGCATTGGCTGTTGATGCTCGACAAG AGATAGATTTGAAAGTTGGAGTGGCATTTACACGTTTCCAAACCAGTTATTTCCAGGGAAAATATGGAAATCTCGACTCCAGAGTAATCTCCTATGGACC ATGCCAAACCCCTACTCTGGGATTCTGTGTTCAGCGGTATCTGCAAATTACAACGTTTAAGGCTGAAAAGTACTGGTCCTTGCACCCTTATATAGTAACG GATGGTTTTGAGCTGCAGCTGGAGTGGGAACGCCAGAGATTGTTTGATATGGATGTTGCTGTTATGTTTCAAAAGCTTGTCATGCAAGATGGATCATTTG TAGTCACTGGAATAACAGAAGAAAATGAAACCAAAAGTCGTCCACATGGCCTAAACACGGTCAACCTTCTTAAGGTTGCTTCAAGTGCATTAGGCTTTGG TCCTCATCAAGCAATGCAGCTAGCTGAACGCTTATGTACTCAAGGATTCATCAGGTGGTTGTTCATCGTCTTGATTATGTCTTGTTTCTGTATCGTGCTT GATGCATTCTTCCATTACCCACGTACCGAGAGTACAGCCTACCCCTCCTCGTTTGACTTCAGAAGCACACTAGGAGAATTAGTGAAAAATCCAACTTTGG GTGAATATGCATGCAGCCTGCTTTCTGGAGGCTATCAGAAGCCAAAATCTGGGACAGACGTAGGTGATCATCCTCCTTTTACTCCCATGCGATCAGCCAG TGAGGATATAATTGGTGTTGATGCTTGGAGACTATATCAATACATCTGTCAACATTTTCTAGGGACTGTATCACCTGACTGCAAGTTTGTAAGGCGCGTT AGAGTTCAAGGGTTTACTTCTATCATGCCTTGGTTGGCTGTTTGTGAGAAAAATATTCCACTGTTTGCTAAAGGGCAGAAAATCAGAATGTCAAAAGTAG AGTTATTTGAGGTGCTCTTCTTTTCCTCATCTCGAGTAGGTTTCGTGTGCTATGTTCTGGGGAAAACTGCTCCTCCAGATTATCTTAGCGAGAGTGAGCT GATTTCATTGATGGAGAAGTATGGTATAGGAACAGATGCATCAATACCTGTCCACATTAACAACATCTGTGAACGCAACAACGTGCAGGTACATGCTGGG AGGAAACTCGTTCCAACTGCTTTAGGTATCACCTTAATAAGAGGCTACCAACGTATTGATCCAGATCTTTATTTGCCCGACATCCGGAGTTTCATCGAGC AGCAGATTATGCTTGTTGCCAAGGGCCAAGCTGACCATTCCCATGTTGTGCTGCATGTATTGCAACAATTCAAGCAAAAGTTTGCTTACTTTGTTAAGCA GATAGACAACATGGATGCATTGTTTGAACCACAGTTCTCTCCGCTTGTTGATTCAGGGAAAGCACTTAGCAAATGCGGTAAATGTCTGAGGTACATGAAG TACATTTCCATCCAACCATCTCGCCTATACTGTGGTACTTGCGAGGAGGTGTATTATGTTCCTCAGAAGGGTACAATAAAGCTGTACAAAGAGCTGACTT GCCCACTGGACAACTTCGAGCTGTTGATATTCTCCATGGGTGGTCCAGAAGGCAAGCACTCTGTAATAGCACAAGGAGTTTGTGCTTGCCCCGAATGCAG CGGAAAGTTAGTGCTCGACCCGGTAAGCGCTCCCAAATGGAGACTATACTGCAACATGTGCAATTGCCTTGTGTTGCTTCCACAGGGAGCTCACAAGATC AGCACCACCGACGAGCGGTGCGTTGAATGCGAATCGAAGATCATCGAAGTAGACTTCAACAAGAACTCTACACCTTTGAAAGATGGTAATTCATTGCATA GAGGGTGCATTCTATGCGATGACCTGCTTCACTCGGTCGTGGAGGTTAAGCACGGGAAATCATTCTTCAAGCGTAGCGGTGGAGCGAGGGGACGAGGAGG CTCGTGGCGAAGAGGAGGAAGAGGGAGGGGTAATTCTGGGAAAAGGGTTGATCCCAAAATGAGCTTCTCAGAGTTCTGA
AA sequence Show only first row Show all	>Lus10021692 pacid=23180306 polypeptide=Lus10021692 locus=Lus10021692.g ID=Lus10021692.BGIv1.0 annot-version=v1.0 MAPPGVLMVAEKPSIASSIASVLSHGKMFTRKGSTDVHEFDAMFLGFPAHYKVTSVIGHVFSVDFPEKYQNWSTTDPLDLFQVIECAGFQINDGRRKIHR AWFSSVTEKDISKAIDNLVEPNKDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQITTFKAEKYWSLHPYIVT DGFELQLEWERQRLFDMDVAVMFQKLVMQDGSFVVTGITEENETKSRPHGLNTVNLLKVASSALGFGPHQAMQLAERLCTQGFIRWLFIVLIMSCFCIVL DAFFHYPRTESTAYPSSFDFRSTLGELVKNPTLGEYACSLLSGGYQKPKSGTDVGDHPPFTPMRSASEDIIGVDAWRLYQYICQHFLGTVSPDCKFVRRV RVQGFTSIMPWLAVCEKNIPLFAKGQKIRMSKVELFEVLFFSSSRVGFVCYVLGKTAPPDYLSESELISLMEKYGIGTDASIPVHINNICERNNVQVHAG RKLVPTALGITLIRGYQRIDPDLYLPDIRSFIEQQIMLVAKGQADHSHVVLHVLQQFKQKFAYFVKQIDNMDALFEPQFSPLVDSGKALSKCGKCLRYMK YISIQPSRLYCGTCEEVYYVPQKGTIKLYKELTCPLDNFELLIFSMGGPEGKHSVIAQGVCACPECSGKLVLDPVSAPKWRLYCNMCNCLVLLPQGAHKI STTDERCVECESKIIEVDFNKNSTPLKDGNSLHRGCILCDDLLHSVVEVKHGKSFFKRSGGARGRGGSWRRGGRGRGNSGKRVDPKMSFSEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	0	1
AT5G60370			unknown protein		Lus10023343 [exp]	3.2	0.8656
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	7.7	0.8334
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	8.5	0.7773
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	9.4	0.8410
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	13.0	0.7846
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	14.8	0.7905
AT1G71760			unknown protein		Lus10004010 [exp]	18.0	0.8161
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	18.2	0.8503
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	18.8	0.7827
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	20.5	0.8061

Compare expression of checked genes

Lus10021692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.