Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25480 498 / 7e-172 Aluminium activated malate transporter family protein (.1) AT3G18440 497 / 8e-171 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G68600 493 / 6e-170 Aluminium activated malate transporter family protein (.1) AT2G17470 486 / 3e-167 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G18420 455 / 1e-154 Aluminium activated malate transporter family protein (.1) AT5G46610 229 / 5e-68 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 222 / 4e-65 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 206 / 3e-59 Aluminium activated malate transporter family protein (.1) AT3G11680 184 / 8e-52 Aluminium activated malate transporter family protein (.1) AT4G00910 169 / 4e-46 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 504 / 1e-173 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10035037 [exp] 458 / 2e-157 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 458 / 7e-156 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10039926 [exp] 314 / 3e-103 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 239 / 8e-72 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 232 / 4e-69 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10024710 [exp] 229 / 5e-69 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10030975 [exp] 213 / 1e-61 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10021272 [exp] 199 / 4e-57 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118600 [exp] 588 / 0 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.015G053400 [exp] 528 / 0 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 466 / 3e-159 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 253 / 2e-77 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 249 / 1e-75 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 234 / 5e-70 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.003G145000 [exp] 194 / 4e-55 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 191 / 2e-54 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 191 / 3e-54 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 189 / 1e-53 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10021694 pacid=23180313 polypeptide=Lus10021694 locus=Lus10021694.g ID=Lus10021694.BGIv1.0 annot-version=v1.0 ATGGGAACGAGAATAGAATCGTTGGAGGAGAATTTGGAGCAGAGTAAAGAGAGGCTGCTTTCGTCTCGAAAAGGGTACTCCGAATTCGGGTTCAACAGCT CCCAAGAGGATGAAGACTCTGCATCAGAGAGAGAAGACCACAATGAAGAAGAAGAAGCCGGTGGAAGAGGATGCTGTTGGTCTCTCTGCCATGGGATCGT CACATTCTGCCAGGTCAGATCCTCCGAGCTATACAATATGGGGAGATCAGATCCTCGAAAGATCTTCTTCGCAATCAAAATGGGGCTTTCCCTGGCTACG GTCTCGATGCTCATGATCTTCAGGGAACATTTGGAAGGTGCCAGCCAGTACTCCATTTGGGCTATTATCACTGTCGTCGTCGTGTTCGAATTCACCGTCG GTGGGACACTAAGCAAAGGATTAAACAGAGGGTTAGGAACATTTTCTGCAGGGGCACTTGCTCTTGGAAATGCAGAGCTCTCTGTTTTCTTTGGCAAATA TCAAGAAGTCTATATCATACTCAGTATTTTCATTGCAGGATTTTGTGCGAGCTACGCGAAACTGTATCCTCCGTTAAAGCAATACGAGTATGGATTCCGA GTCTTCTTACTAACATACTGCATAGTGTTGGTCTCGGGGATCGAATCTTCCTTCTTCCGGACAGCCATTTTCCGATTCATCCTGATCGGTGTCGGTGCAA CCGTCTGCCTGGCGGTCAACATCTGCATATTCCCAATATGGGCGGGTGATGATCTTCACAAGTTGGTGGTGAAGAATTTCAGAGGCGTAGCCACTTCTTT GGAAGGTTGTGTGAATGGCTACTTGAAGTGTATGGAGTATGAAAGAGTCCCTTCCAAAATCTTGGTGTACCAAGTCTCTGATGACCCTGTTTACAATGGC TACAGATCTGCTGTTCAATCCACTTCTCAAGAGGATACCTTGTTAGGGTTTGCTGTATGGGAGCCACCACATGGTCGTTATGGGTTCTTCTGTTATCCAT GGCAAAGTTATGTGAAAGTGAGTGGAGCTCTGAGGCACTGTGCTTTCATGGTGATGGCTATGCATGGATGCATTCTTTCTGAAATTCAGGCGCCGGCAGA GAAGAGACGCGTATTTGCCAGAGAGCTCCAAGCAGTAGGCAACGAAGGAGCCAAAGTACTCCGTGAAATCGCAACAAAACTAGAGAAATTGGAAAAGCTA AGCCCCACCAGAGACGAACTACTACTCAAAGTGCAACAAGCAGCTGAAGAATTACAGATGAAAGTCGACCAAAAATCATACCTTTTGGTAAACTCCGAAA GCTGGGCGAAGAAAAAACAACCAAACGACCAAACCGAAACAGACCCTGACCGAGATTTGAATAAAGCAGAGGATCAAGACAGTAAAGCCGCCGCCACCAA CGACAATAACAAGATTAACAATGCAAGCGCTCGCAGCAGCTTCTACAACAACCAGAGCAGCCGGGCGTCTTCCGAGAGCTTCCAGCCGCCGCCGCTGTCG TGGGCGCGTGTCCCGGTTCTGCGTGGGGGCGGCGCTCGTCTCCCAATTTGGAGCCGGAGTCGAAGGCTTCAGAATCTTGTGGATGAGTATCAGGAGCTCG GTGAGAAGGCGAGGTTCGAGGATTCTGATCAATTTGGTGGTGGGCGGGGATCTGTTGGGTTCTGGACTAGGCTTAAGAGATGTTTTTTGTTGTAG
AA sequence Show only first row Show all	>Lus10021694 pacid=23180313 polypeptide=Lus10021694 locus=Lus10021694.g ID=Lus10021694.BGIv1.0 annot-version=v1.0 MGTRIESLEENLEQSKERLLSSRKGYSEFGFNSSQEDEDSASEREDHNEEEEAGGRGCCWSLCHGIVTFCQVRSSELYNMGRSDPRKIFFAIKMGLSLAT VSMLMIFREHLEGASQYSIWAIITVVVVFEFTVGGTLSKGLNRGLGTFSAGALALGNAELSVFFGKYQEVYIILSIFIAGFCASYAKLYPPLKQYEYGFR VFLLTYCIVLVSGIESSFFRTAIFRFILIGVGATVCLAVNICIFPIWAGDDLHKLVVKNFRGVATSLEGCVNGYLKCMEYERVPSKILVYQVSDDPVYNG YRSAVQSTSQEDTLLGFAVWEPPHGRYGFFCYPWQSYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRRVFARELQAVGNEGAKVLREIATKLEKLEKL SPTRDELLLKVQQAAEELQMKVDQKSYLLVNSESWAKKKQPNDQTETDPDRDLNKAEDQDSKAAATNDNNKINNASARSSFYNNQSSRASSESFQPPPLS WARVPVLRGGGARLPIWSRSRRLQNLVDEYQELGEKARFEDSDQFGGGRGSVGFWTRLKRCFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25480			Aluminium activated malate tra...		Lus10021694 [exp]	0	1
AT1G02550			Plant invertase/pectin methyle...		Lus10039849 [exp]	1.0	0.9121
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	8.0	0.9084
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	11.0	0.8733
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	11.2	0.8890
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	15.9	0.8886
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	16.6	0.8874
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	17.1	0.8742
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	17.2	0.8669
AT2G35615			Eukaryotic aspartyl protease f...		Lus10003280 [exp]	18.8	0.8361
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	19.6	0.8411

Compare expression of checked genes

Lus10021694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.