Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14870 175 / 3e-56 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT5G35525 166 / 1e-52 PLAC8 family protein (.1) AT1G68610 154 / 4e-48 PCR11 PLANT CADMIUM RESISTANCE 11 (.1) AT1G14880 151 / 5e-47 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT3G18470 138 / 5e-42 PLAC8 family protein (.1) AT3G18460 133 / 2e-39 PLAC8 family protein (.1) AT1G58320 128 / 6e-38 PLAC8 family protein (.1) AT1G49030 127 / 2e-36 PLAC8 family protein (.1) AT1G52200 123 / 2e-35 PLAC8 family protein (.1) AT1G68630 121 / 6e-35 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034298 [exp] 211 / 7e-70 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 172 / 1e-54 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 169 / 3e-53 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10041474 [exp] 160 / 3e-50 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10035039 [exp] 134 / 3e-40 AT5G35525 78 / 2e-19 PLAC8 family protein (.1) Lus10004063 [exp] 122 / 1e-35 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 109 / 2e-30 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10008890 [exp] 107 / 9e-30 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10004064 [exp] 99 / 5e-24 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127700 [exp] 213 / 1e-70 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132775 [exp] 182 / 1e-58 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 181 / 6e-58 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 179 / 2e-57 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 178 / 5e-57 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 174 / 3e-55 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 164 / 1e-51 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 163 / 3e-51 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 162 / 2e-50 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127800 [exp] 136 / 6e-41 AT1G68630 151 / 1e-47 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10021696 pacid=23180286 polypeptide=Lus10021696 locus=Lus10021696.g ID=Lus10021696.BGIv1.0 annot-version=v1.0 ATGGCTCATCATGATCTTCCAAACACACCGCCGAACCCACAAGCTCCGCCGCACGCAGCCCCCATATTCCAAGGCGTCCACCAAGTCAACACCCAACCAC CCGGCGGCCTAACTCCTCTTCCTCCTCCTGGCTCCGCCCTTAGCCCATGCCCAGCCAATAATAATCCTCCCGGTTCTCCCTTGCCGTGGTCCACCGGTCT CTGCGATTGTTACCATGATTGCTCTTCTTGCTGCTTGACGGTATGGTGCCCATGCGTTACATTCGGGAGAATTGCTGAGATAGTTGACCAGGGATCAACA TCATGCGGACTGAGCGGGACAATATACGTGATGATGATGTGGATTTTAGGGTGCGCCTGCATATTCTCGTGCTTCTACAGGTCCAAGATGCGAGGCCAGT TTCACTTGCAGGAGAAACCTTGTGCAGATTGCTGCGTCCATCTGTTTTGCGAAGGGTGTGCTCTTTGTCAGGAGTATCGTGAGCTTACGCACAAAGGATT TGATATGTCCATCGGGTGGCATGGGAACATGGCGAGAAACAGGAGATTGGCTACTACGGCTCCCACTGTTGAAGCAGGAATGAACCGAGGGAGATAA
AA sequence Show only first row Show all	>Lus10021696 pacid=23180286 polypeptide=Lus10021696 locus=Lus10021696.g ID=Lus10021696.BGIv1.0 annot-version=v1.0 MAHHDLPNTPPNPQAPPHAAPIFQGVHQVNTQPPGGLTPLPPPGSALSPCPANNNPPGSPLPWSTGLCDCYHDCSSCCLTVWCPCVTFGRIAEIVDQGST SCGLSGTIYVMMMWILGCACIFSCFYRSKMRGQFHLQEKPCADCCVHLFCEGCALCQEYRELTHKGFDMSIGWHGNMARNRRLATTAPTVEAGMNRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	0	1
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	2.0	0.9393
					Lus10021373 [exp]	8.2	0.9151
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	9.5	0.9145
					Lus10005128 [exp]	10.2	0.8522
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	11.2	0.8906
					Lus10011553 [exp]	14.0	0.8981
AT4G02830			unknown protein		Lus10042573 [exp]	14.7	0.9036
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	15.4	0.8736
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	18.3	0.8920
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10039627 [exp]	20.4	0.8850

Compare expression of checked genes

Lus10021696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.