Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25520 73 / 2e-15 Uncharacterized protein family (UPF0016) (.1) AT1G68650 72 / 4e-15 Uncharacterized protein family (UPF0016) (.1) AT5G36290 44 / 4e-05 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035040 [exp] 168 / 1e-49 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 101 / 3e-26 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10034293 [exp] 100 / 1e-25 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10034297 [exp] 51 / 4e-08 ND / Lus10020195 [exp] 46 / 5e-06 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10026995 [exp] 46 / 9e-06 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128400 [exp] 89 / 2e-21 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.008G117900 [exp] 89 / 3e-21 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 88 / 6e-21 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.009G097500 [exp] 50 / 1e-07 ND / Potri.013G086700 [exp] 45 / 2e-05 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 44 / 4e-05 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.010G127900 [exp] 42 / 7e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021697 pacid=23180293 polypeptide=Lus10021697 locus=Lus10021697.g ID=Lus10021697.BGIv1.0 annot-version=v1.0 ATGTTGAACAACAGAGACTGTAGCAACGAGGATTATAGTACTGATTACGAGAATGATGATTTCTACGCGGATATTAGAAGGCAGATTATGCTTCTGACCG GTGATGACGAGTCGGATCGCAATTGCAAGGTTCTGCCATGCAGTGGCAGAGTAAGGCAGGTGGTTCCGGGGGCGGGAAGCGATGGATTTGGGGATTATTT GAGTTCATGTTCGGACTCAACGCCAGATTGGCTTGTGAAGCTGTGGAGAAGAAGTAGTTCTAGTGTTAAGAATAGCAGCGGGAGTTCAAATGTGGTGGGT ACAGGAGTTTTCATCCCTCAGATCGTTAAATGCAGAGGAAGAGACCGACCCACAGTCAGAAACATAAGGTTTATGGTCATTGCACATTATTCCATTCTTG GTTTGAATTATCTTCTATTCAATGGGGAGTCTGGTGAATTGGCGGAAGTTGAAGCTAAATTGGACGCTGACTGCAAATCTAGTGCTGGAACAAGCAAGGA AGATAGCAAGGCTGATGACGATTCGAAAAAGAAATCACGACCATTTCTTGCACAGTTTTTCTCACCATTACTGTTGAAGGCGTTCTCCATTACATTCTTC GGTGAATGGGGTGACAAGAGTCAGGTACAGACCGTCGCTGCTGCTTTCCTCTTGGGTGTTGCCCTCTCAGGTGGAATTCTTTTTATGGTCTTTGGCGTCC AATCCTTCCTTTCAGACGTCAACTAG
AA sequence Show only first row Show all	>Lus10021697 pacid=23180293 polypeptide=Lus10021697 locus=Lus10021697.g ID=Lus10021697.BGIv1.0 annot-version=v1.0 MLNNRDCSNEDYSTDYENDDFYADIRRQIMLLTGDDESDRNCKVLPCSGRVRQVVPGAGSDGFGDYLSSCSDSTPDWLVKLWRRSSSSVKNSSGSSNVVG TGVFIPQIVKCRGRDRPTVRNIRFMVIAHYSILGLNYLLFNGESGELAEVEAKLDADCKSSAGTSKEDSKADDDSKKKSRPFLAQFFSPLLLKAFSITFF GEWGDKSQVQTVAAAFLLGVALSGGILFMVFGVQSFLSDVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	0	1
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	5.7	0.8474
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	9.8	0.8823
AT2G14095			unknown protein		Lus10001299 [exp]	11.3	0.8929
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	13.3	0.8648
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10018044 [exp]	18.5	0.8773
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	21.7	0.8380
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	22.0	0.8185
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	22.5	0.8535
					Lus10005241 [exp]	23.6	0.8482
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	23.8	0.8801

Compare expression of checked genes

Lus10021697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.