Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29700 433 / 7e-153 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035042 [exp] 607 / 0 AT1G29700 437 / 2e-154 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117600 [exp] 466 / 5e-166 AT1G29700 432 / 3e-152 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021698 pacid=23180327 polypeptide=Lus10021698 locus=Lus10021698.g ID=Lus10021698.BGIv1.0 annot-version=v1.0 ATGGCGCTTCAGTTCACTTCTCTTCCTTGCTCAACTCCTAAACAGATATCATCGCTCTTCGCTCCCACCCGCCGATCTTCTACCTCAACAATCACCAAGC GCGTCTCATCCACCTCCTTCTCCCTCAATCTTCCAATTAAGCCCTTCGTCTCTCCACCTCTTCACAGAAATAATGGCCAGGTTGCTTATGCTGTTGCATC CGAAGAAAATGCAGTTGGCTCCAGCTCCCCCGGCGCCAGTGTCTTCAACCTCACTTATTTAGAGGGTAACAGTTGGTTGTGGGAGGTAGACGGAGTGAAG ATTTTGGTTGACCCGATTCTGGTTGGCAACTTGGATTTCGGAATTCCGTGGCTCTACGATGCTGCCAAGAAGTTCCTCAAATCTTTCCAGCTCAGCGATC TTCCTGAAGTAGACTGCTTATTGATCACACAGAGCCTTGATGATCACTGCCATTTGAAGACGTTGAAGCCCTTCTCGGAGATGTATCCGAATATTCGAGT GATAGCAACCCCTAATGCCAAGCCATTGCTTGACCCTCTTTTTACCAATGTAATGTACTTGGAACCAGGTGAGGTCTCTGAACTGGAAGCTAAAACTGGC TCAAAAGTGACAGTCAAAGCTACCCCGGGACCTGTATTGGGACCTCCTTGGCAGCGTCCAGAGAACGGATACCTAGTTAGTTCCCCTCACGGTGAATCTA CTCTTTACTATGAACCTCACTGCGTGTATGACCAGAACTTTCTTGGAAAGGAACATGCTGATATCATTATCACGCCTGTTGTAAAGCAGCTTCTTCCCAG ATTTACTCTAGTTTCAGGCCAAGAAGATGCAGTTCGGCTTGCGAAGTTGCTGAAAGCAAAATTCATTGTGCCTATGAGAAATGGAGAACTTGACAGCAAA GGGTTGCTCGCCAGTATTATTCAGGCAGAGGGGACACTTGAATCCTTCAAGGAACTTCTATCCCAAGAGATGCCAGATGCTAGCGTTCTCGAGCCAACTC CCGGTGTGCCGCTCAAAGTTTCCGCAGCTGAACCTTGA
AA sequence Show only first row Show all	>Lus10021698 pacid=23180327 polypeptide=Lus10021698 locus=Lus10021698.g ID=Lus10021698.BGIv1.0 annot-version=v1.0 MALQFTSLPCSTPKQISSLFAPTRRSSTSTITKRVSSTSFSLNLPIKPFVSPPLHRNNGQVAYAVASEENAVGSSSPGASVFNLTYLEGNSWLWEVDGVK ILVDPILVGNLDFGIPWLYDAAKKFLKSFQLSDLPEVDCLLITQSLDDHCHLKTLKPFSEMYPNIRVIATPNAKPLLDPLFTNVMYLEPGEVSELEAKTG SKVTVKATPGPVLGPPWQRPENGYLVSSPHGESTLYYEPHCVYDQNFLGKEHADIIITPVVKQLLPRFTLVSGQEDAVRLAKLLKAKFIVPMRNGELDSK GLLASIIQAEGTLESFKELLSQEMPDASVLEPTPGVPLKVSAAEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10021698 [exp]	0	1
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	4.2	0.8851
AT3G27390			unknown protein		Lus10032110 [exp]	9.2	0.8728
AT3G09050			unknown protein		Lus10027783 [exp]	9.8	0.8814
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	10.2	0.8873
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	12.6	0.8828
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	12.8	0.8164
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	14.7	0.8794
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	19.9	0.8647
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	20.4	0.8550
AT2G36895			unknown protein		Lus10023001 [exp]	21.2	0.8703

Compare expression of checked genes

Lus10021698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.