Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13270 512 / 0 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 429 / 6e-151 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT4G37040 385 / 2e-133 MAP1D methionine aminopeptidase 1D (.1) AT2G45240 288 / 2e-94 MAP1A methionine aminopeptidase 1A (.1) AT1G09300 52 / 4e-07 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035045 [exp] 610 / 0 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10011514 [exp] 396 / 1e-128 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 387 / 4e-125 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021657 [exp] 286 / 7e-94 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10001650 [exp] 252 / 6e-81 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10003379 [exp] 48 / 1e-05 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 47 / 2e-05 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10010905 [exp] 45 / 8e-05 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 44 / 0.0002 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117200 [exp] 547 / 0 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.005G137400 [exp] 403 / 2e-140 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.014G067300 [exp] 286 / 7e-94 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.010G129101 [exp] 67 / 2e-13 AT1G13270 54 / 1e-09 methionine aminopeptidase 1B (.1.2) Potri.013G007100 [exp] 55 / 5e-08 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.016G119700 [exp] 45 / 6e-05 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.006G102200 [exp] 45 / 8e-05 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10021701 pacid=23180281 polypeptide=Lus10021701 locus=Lus10021701.g ID=Lus10021701.BGIv1.0 annot-version=v1.0 ATGGGTTTCTTCACTGCGTCACTGTCTCACCCAGCTTCCCTGCAGCTCTCTGTTTCCTTTCATGGCGAACTCCCTTCCTCTTCTACTTCCTCAATATCAT CTTCCTTCACGGGCTCTCCACTTTCCTTTTCTGCAACAACTCTGCCAGGATCCCAATCGTTTTCTCAACGTAGCCTCGTAGCTTACGCAAAAAGATTATC TGGTTTAGAAGAGGCAATGAACATCCAACGGGAGAGGGAGCTCAGTACTAGCAATCCTACGGTCAGAAGAAGACCCCCGTTAAGGCGTGGGAAGGTGTCA CCTAGATTAGCAGTGCCTGATCATATACCCAAACCTCCTTATGTGGCTACCAGAGAGTTGCCTGAGCTTGCTAGTGAGCATCAGTTTCATGACGCTGAAG GGATTCAGAAAATGAGGGCTGCTTGCGAGCTTGCTGCTCGTGTGTTGGACGCTGCTGGTGAATTGGTTAAGCCATCAGTAACAACAAACGAAATTGACAA AGCTGTGCACCAAATGATCATCGATGCTGGTGCATATCCTTCACCTCTTGGGTATGGAGGATTTCCAAAGAGTGTGTGTACATCCGTTAATGAGTGCATG TGTCATGGCATACCGGATTCTCGCCAACTGCAGGACGGGGACATTATAAACATTGACGTGACCGTCTACTTGAATGGGTACCATGGTGATACGTCGAAAA CTTTTATGTGTGGAAATGTTAGTAATACGCTGAAACGTCTAATTAAGGTGACTGAAGAATGCATGGAGAAAGGAATTTCAGTTTGTAGAGATGGTACCGG TTTCAGGAAAATTGGCAAAAGAATTAGTGAGCATGCTGAGAAGTATGGTTATTGTGTTGTGGAGCGTTTTGTTGGGCATGGTGTTGGGCAAGTGTTCCAT TCGGCACCAGTAATATTGCATCACCGCAATGAAGAGGGCGGCATCATGGCTGAAGGTCAAACATTCACCATTGAACCGATTCTTACATTGGGAAGCACGG AGTGTATAACGTGGCCAGACAACTGGACAACGTTGACAGCTGACGGAAGCCCTGCTGCACAGTTTGAGCACACCATTCTGATCACGAAAACCGGCGCTGA AATCCTGACAACATATTGA
AA sequence Show only first row Show all	>Lus10021701 pacid=23180281 polypeptide=Lus10021701 locus=Lus10021701.g ID=Lus10021701.BGIv1.0 annot-version=v1.0 MGFFTASLSHPASLQLSVSFHGELPSSSTSSISSSFTGSPLSFSATTLPGSQSFSQRSLVAYAKRLSGLEEAMNIQRERELSTSNPTVRRRPPLRRGKVS PRLAVPDHIPKPPYVATRELPELASEHQFHDAEGIQKMRAACELAARVLDAAGELVKPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECM CHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFMCGNVSNTLKRLIKVTEECMEKGISVCRDGTGFRKIGKRISEHAEKYGYCVVERFVGHGVGQVFH SAPVILHHRNEEGGIMAEGQTFTIEPILTLGSTECITWPDNWTTLTADGSPAAQFEHTILITKTGAEILTTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	1.0	0.9330
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	1.4	0.9295
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	2.0	0.9212
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	2.4	0.9272
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	2.8	0.8959
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	3.2	0.9168
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	3.7	0.8968
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	4.2	0.9155
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	5.7	0.8912
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	6.0	0.8876

Compare expression of checked genes

Lus10021701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.