Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17410 125 / 2e-31 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT5G47430 125 / 4e-31 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034393 [exp] 209 / 2e-64 AT5G47430 186 / 4e-52 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10035046 [exp] 193 / 2e-61 ND 40 / 2e-04 Lus10029205 [exp] 183 / 3e-54 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10004741 [exp] 111 / 2e-26 AT5G47430 648 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10007803 [exp] 110 / 2e-26 AT5G47430 517 / 2e-175 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078800 [exp] 112 / 4e-27 AT5G47430 635 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.013G112200 [exp] 108 / 3e-26 AT5G47430 260 / 1e-78 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.001G156000 [exp] 108 / 1e-25 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF08783 [flax] [poplar] DWNN DWNN domain
Representative CDS sequence Show only first row Show all	>Lus10021702 pacid=23180346 polypeptide=Lus10021702 locus=Lus10021702.g ID=Lus10021702.BGIv1.0 annot-version=v1.0 ATGTCGTGTATGACAGTGCGTTACAAGTTTGTGAGTGAGAAGGATTTCCGCGAGATCCGATTGCCAGAGCGTTACACGACTGTCCGTGATCTGAAATTGA GAATTTTCAATTCTAGTTTCAAAGATCAATATGAAAATAATAAGAGTCAGTATCATAGTATCTGGAAGGGCTGCTGTTTAGGAACTGATCACGATCTTCA CATCATCGATTCCAAAACGAACACCCCGTATAAGAAAGACTCGGCTCTGATCTCCGATCAAGCCGCTGTTTTAATCCGTCGCGTTGCAGGCGATCACCAG CGGCGGCTCATAGACACTGAGCCCATCAATTTACGAGAAACCGATTCCGACGGCGACAGTTCCGTGACGGTCGACGAGAACATCATCACCTCAAGAAAGG AGGAGGAGATCGATATCCATGATTTTGGAGAGAAGAAGAAGGGTCCAGTTGATGGAGATGAGGAGGACAAGAAGATTCCGGCGGCGTCGAGAAAGAGAAA GAGGCATATGCCTTACTCTCCCTTCTCTTCTCTGTCTCCTCCTTGGGACAACTACGTCTGCCATCGTTGTAAGATCGAGGGCCACCACATTAAAGAATGT CCGACCAACGGAGATCCGGATTACGATCTTTGCAAGAAAGCGAAGACAATGGCGGTCAATCGTGCTGCAGAGAAGGAGTTTGACAATCTGATGGAGGGGA TCTCATCGGACTGGAGGAGTTCCAAGTCTACCTTGAGCAGCGAAACAACAACCACTAGCAGCAGCAGGAGGAAGACGAGTAGTTATTCAGGAAGTGGTGC TGTTCCGGGGGAGCTAAACTGCCCAATATGCAGATCGGTGATGAGAGACGCGGTGTTAGCGAAGAGATGCTGCTTCAGGAGCTTCTGCGACGGGTGCATT AGAGACAATGTGAAGAAATCAAAGGCTTGTGCTTGTGGGGCAACGAATGGTGAGGATGATTTTGTTGTGCCTAATGTTGCTGTTAGAAACTTGATTAAGT CTATTCTGCTACAAAAGAGTAGCAGCACTAGTAGTTGTAGTAGTGATATTACTAGTGTTGGTAGCAACAGTGGCTCGATCAACTGTGACTAG
AA sequence Show only first row Show all	>Lus10021702 pacid=23180346 polypeptide=Lus10021702 locus=Lus10021702.g ID=Lus10021702.BGIv1.0 annot-version=v1.0 MSCMTVRYKFVSEKDFREIRLPERYTTVRDLKLRIFNSSFKDQYENNKSQYHSIWKGCCLGTDHDLHIIDSKTNTPYKKDSALISDQAAVLIRRVAGDHQ RRLIDTEPINLRETDSDGDSSVTVDENIITSRKEEEIDIHDFGEKKKGPVDGDEEDKKIPAASRKRKRHMPYSPFSSLSPPWDNYVCHRCKIEGHHIKEC PTNGDPDYDLCKKAKTMAVNRAAEKEFDNLMEGISSDWRSSKSTLSSETTTTSSSRRKTSSYSGSGAVPGELNCPICRSVMRDAVLAKRCCFRSFCDGCI RDNVKKSKACACGATNGEDDFVVPNVAVRNLIKSILLQKSSSTSSCSSDITSVGSNSGSINCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17410			DWNN domain, a CCHC-type zinc ...		Lus10021702 [exp]	0	1
					Lus10013898 [exp]	15.0	0.5971
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	21.7	0.5700
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	24.4	0.5517
					Lus10002746 [exp]	43.2	0.5375
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	45.6	0.5299
					Lus10030974 [exp]	85.3	0.4678
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10035821 [exp]	106.8	0.4771
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	142.3	0.4654
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	162.0	0.4581
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	167.9	0.4041

Compare expression of checked genes

Lus10021702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.