Plant FIBer expression Database

Lus10021704 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47090 182 / 4e-57 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035063
[exp]
293 / 2e-100 AT5G47090 363 / 2e-126 unknown protein
Lus10035047
[exp]
290 / 1e-99 AT5G47090 361 / 1e-125 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G149800
[exp]
187 / 9e-59 AT5G47090 369 / 3e-128 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09747 DUF2052 Coiled-coil domain containing protein (DUF2052)
Representative CDS sequence
>Lus10021704 pacid=23180280 polypeptide=Lus10021704 locus=Lus10021704.g ID=Lus10021704.BGIv1.0 annot-version=v1.0
ATGAGGCACAGGGAGCCATATTGGCATCATGAATTTGTCGGCAAGTTTCAAGATCTAAGTGCAAGGACCATGGCAAAGCCAGGGGAACGGTGGTCTGAGA
CTTTAATCAGGAGAGCTGAGGAAGCGATACTGGTCTCAAAGATGCGGGAAGAGCAGCAGAGACTAGGTGTCTCGGAGAGTGAATGGGTTGGTGGTTATGG
AGAAAGCCAACAGAAGGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAGGAGGACGATGATGATGAAGAAGAAAATTTAATGAATGTTCAAATTAATGGCGAGGGAAGTGCTCCGTCAACCACTGAACAGCATGACAAGGAAG
AAACTGTATCAGCTGAGGAGATGGAAGATAGGATGGACCAATTTACTGCGATAATGCACCAGAAGTTTCTGTCCGGTGAAGACGATGAGAACTTTGATTA
TGCAAAAATCGACGAGGATGAGACGTTGGATGATCATTGGTTCGAGGACAAAACTCGTGATGCAGAGGATAAGTATTTTGCAGAGGACGACTGA
AA sequence
>Lus10021704 pacid=23180280 polypeptide=Lus10021704 locus=Lus10021704.g ID=Lus10021704.BGIv1.0 annot-version=v1.0
MRHREPYWHHEFVGKFQDLSARTMAKPGERWSETLIRRAEEAILVSKMREEQQRLGVSESEWVGGYGESQQKEEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEDDDDEEENLMNVQINGEGSAPSTTEQHDKEETVSAEEMEDRMDQFTAIMHQKFLSGEDDENFDYAKIDEDETLDDHWFEDKTRDAEDKYFAEDD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G47090 unknown protein Lus10021704
[exp]
0 1
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10029816
[exp]
1.4 0.9256
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10000559
[exp]
3.7 0.9159
AT3G24530 AAA-type ATPase family protein... Lus10005293
[exp]
5.2 0.9067
AT1G66980 GDPDL2, SNC4 Glycerophosphodiester phosphod... Lus10027085
[exp]
5.3 0.8624
AT4G03230 S-locus lectin protein kinase ... Lus10012956
[exp]
6.0 0.8976
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10020736
[exp]
6.3 0.8964
AT1G22620 ATSAC1 suppressor of actin 1, Phospho... Lus10016941
[exp]
9.5 0.8872
AT1G44750 ATPUP11 purine permease 11 (.1.2.3) Lus10012606
[exp]
10.0 0.8516
AT1G53200 unknown protein Lus10005971
[exp]
10.2 0.8778
AT2G19130 S-locus lectin protein kinase ... Lus10012955
[exp]
12.0 0.8627

Lus10021704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.