Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23880 1175 / 0 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT1G61010 126 / 7e-30 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 117 / 4e-27 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035061 [exp] 1447 / 0 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035763 [exp] 124 / 1e-29 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 121 / 9e-29 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10015460 [exp] 107 / 4e-24 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10040483 [exp] 47 / 4e-05 AT3G07530 548 / 0.0 unknown protein Lus10011289 [exp] 44 / 0.0006 AT3G07530 557 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G231800 [exp] 1229 / 0 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Potri.017G076000 [exp] 124 / 4e-29 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 122 / 9e-29 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.017G076132 [exp] 120 / 4e-28 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 116 / 7e-27 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [flax] [poplar] P-loop_NTPase PF10996 [flax] [poplar] Beta-Casp Beta-Casp domain
Representative CDS sequence Show only first row Show all	>Lus10021705 pacid=23180267 polypeptide=Lus10021705 locus=Lus10021705.g ID=Lus10021705.BGIv1.0 annot-version=v1.0 ATGGGGACTTCTGTGCAGGTCACACCGCTTTGTGGAGTTTACAATGAGAACCCCTTATCGTACTTAGTCTCCATCGATGGCTTTAATTTCTTGATTGACT GCGGTTGGAATGATCACTTCGATCCCTCACTCCTCGAGCCCCTCTCCAGGGTAGCTTCGAAAATAGATGCAGTTTTGTTGTCATTTCCGGACACACTTCA TTTGGGTGGATTGGCTTATGCCATGTGTCATCTTGGACTCTCAGCTCCAGTTTACTCGACAGAGCCAGTTTTTAGATTAGGCTTACTCACTATGTACGAT CAGTATTTATCTCGCAAGGCTGTTTCAGACTTTGATCTCTTTACGCTGGATGATGTCGATTCAGCTTTCCTAAACATTACCAGGCTTACTTACTCACAGA ATCACCTTCTTTCTGGTAAGGGTGAAGGTATTGTTATTGCACCCCATGTGGCTGGTCATCTCCTCGGAGGTACTGTATGGAAGATAACAAAGGATGGAGA AGATGTTGTGTATGGTGTTGACTTCAACCACCGTAAAGAAAAGCATTTGAATGGAATTGTTGCAGAGTCTTTTGTCCGTCCTGCTGTTCTAATAACTGAT GCTTATAATGCTTTGAGTAATCAACTTCCCAGACAACAAAGAGACAGAGAATTTTTAGAGCGAATTGTCAGGACATTAGAAGCAGGTGGAAATGTATTAC TGCCTGTTGACTCTGCTGGACGAGCTTTCGAACTTATCCTCATACTAGAAGAGTTCTGGAGACAACGTGATTTACCATTCGACATTTTCTTTCTTACATA TGTTGCATCAAGCACCATTGACTATGTCAAGAGTTTCTTGGAGTGGATGGGTGATTCAATTGCCAAGTCGTTTGAGGCTTCACGTAACAATGCTTTTCTG TTGAAGCATGTGAAACTTCTAATCAGCAAGATGGACCTTGATAATGCTCCAAACAGTCCAAAGGTAGTTCTTGCCTCAATGGCAAGCTTGGAGGCAGGAT TTTCCCATGATATATTTGTTGAATGGGCATCTGATGCTAGGAACTTAGTGCTTTTCACTGAAAGAGGCCAGTTTGGGACCTTGGCTCGCATGCTTCAGGC AGATCCACCTCCAAAGGCTGTTAAAGTCACTATGTCAGAAAGGGTTCCTTTAGTTGGAGATGAATTAGTTGCCTATGAAGAAGAGCAAAAGCGATTGAAG AAGGAAGAGGAGCTGAAAGCTAGCTTCTTGAAACAAGAGGAATCGAGGGCATCTCATCGGCCTGATAATAGTGTCAGTGATCCAATGGTCACTGATACAA GCAGTGCACACGCTCCACCAGATGTGGTTGGTTCTCATGGAAGTAGATATCGAGACATACTCATTGATGGATTTGTTCCAGCAGCGACTAGTGTGGCACC AATGTTCCCATTTTATGAAAACAACACTGAATGGGATGATTTTGGTGAAATAATAAATCCTGATGATTATGTAATCAAAGATGACGGCATGGACCAAGCT GCTTTGCACGTTGGCGGAGACATTGATGGAAAACTAGACGAAGCCGCTGCTAATTTTATTCTTGATACAAAACCATCGAAAGTTGTTTCCCATGAACTGA CTGTTCAAGTGAAATCTTCATTGATATACATGGATTTCGAGGGACGTTCTGATGGACGCTCAATTAAATCAATCATTGCTCGTGTGGCTCCTCTGAAACT TGTTTTGGTGCATGGATCAGCTGAGGCCACCGAGCATTTGAAGCAGCACTGCTTAAACCATGTCTGTGCACATGTTTATGCTCCTCAAATTGAAGAGACA ATTGACGTAACCTCAGATCTGTGTGCTTATAAGGTGCAACTTTCAGAGCAGCTCATGAGTAATGTTCTCTTCAAGAAGATGGGAGAATATGAAGTAGCTT GGGTTGATGCCAAAGTAGGGAAGACCGAGAACGAGATGCTCTCGTTACTCCCTGTGTCGACTGTGCCTCAGCCACATAAATCAGTCCTTGTTGGTGATCT GAAAATGGCAGATCTCAAGCAGTTCCTTGCAGGGAAGGGTGTTCAGGTGGAATTTGCGGGTGGAGGTGCATTACGTTGTGGAGAGTATGTGACACTCCGC AAAGTTGGAGTTGCCAGCCAAAAGGGAGGTGTATCTGGAACACAGCAGATAATAATAGAAGGTCCCTTATGTGAGGATTACTACAAGATTCGAGAGCACC TTTATTCACAGTTTTATCTAGTGTAG
AA sequence Show only first row Show all	>Lus10021705 pacid=23180267 polypeptide=Lus10021705 locus=Lus10021705.g ID=Lus10021705.BGIv1.0 annot-version=v1.0 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLEPLSRVASKIDAVLLSFPDTLHLGGLAYAMCHLGLSAPVYSTEPVFRLGLLTMYD QYLSRKAVSDFDLFTLDDVDSAFLNITRLTYSQNHLLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYGVDFNHRKEKHLNGIVAESFVRPAVLITD AYNALSNQLPRQQRDREFLERIVRTLEAGGNVLLPVDSAGRAFELILILEEFWRQRDLPFDIFFLTYVASSTIDYVKSFLEWMGDSIAKSFEASRNNAFL LKHVKLLISKMDLDNAPNSPKVVLASMASLEAGFSHDIFVEWASDARNLVLFTERGQFGTLARMLQADPPPKAVKVTMSERVPLVGDELVAYEEEQKRLK KEEELKASFLKQEESRASHRPDNSVSDPMVTDTSSAHAPPDVVGSHGSRYRDILIDGFVPAATSVAPMFPFYENNTEWDDFGEIINPDDYVIKDDGMDQA ALHVGGDIDGKLDEAAANFILDTKPSKVVSHELTVQVKSSLIYMDFEGRSDGRSIKSIIARVAPLKLVLVHGSAEATEHLKQHCLNHVCAHVYAPQIEET IDVTSDLCAYKVQLSEQLMSNVLFKKMGEYEVAWVDAKVGKTENEMLSLLPVSTVPQPHKSVLVGDLKMADLKQFLAGKGVQVEFAGGGALRCGEYVTLR KVGVASQKGGVSGTQQIIIEGPLCEDYYKIREHLYSQFYLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	0	1
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	1.0	0.9645
AT2G04235			unknown protein		Lus10025175 [exp]	3.5	0.9415
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	4.7	0.9438
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	5.9	0.9330
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	6.0	0.9230
AT1G07970			unknown protein		Lus10023345 [exp]	6.9	0.9286
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	8.0	0.9396
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	9.2	0.9353
AT3G14120			unknown protein		Lus10015675 [exp]	14.0	0.9205
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	14.5	0.9237

Compare expression of checked genes

Lus10021705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.