Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25580 462 / 4e-161 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G01600 249 / 1e-78 NAC ANAC044 NAC domain containing protein 44 (.1) AT5G14490 240 / 1e-75 NAC ANAC085 NAC domain containing protein 85 (.1) AT4G29230 235 / 9e-72 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT4G28500 221 / 1e-68 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G28470 220 / 3e-68 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT5G56620 221 / 2e-67 NAC ANAC099 NAC domain containing protein 99 (.1) AT1G02220 76 / 1e-14 NAC ANAC003 NAC domain containing protein 3 (.1) AT1G01720 70 / 4e-13 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 69 / 8e-13 NAC ANAC058 NAC domain containing protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041492 [exp] 578 / 0 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 273 / 1e-86 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10013967 [exp] 227 / 1e-70 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10039873 [exp] 225 / 4e-70 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10034999 [exp] 230 / 1e-69 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10018637 [exp] 223 / 3e-69 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10012927 [exp] 223 / 5e-68 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10015392 [exp] 216 / 5e-67 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10018142 [exp] 70 / 4e-13 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116600 [exp] 540 / 0 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G129700 [exp] 538 / 0 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 256 / 4e-81 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.004G049300 [exp] 229 / 1e-71 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.018G068700 [exp] 233 / 2e-71 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.006G152700 [exp] 233 / 2e-71 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.011G058400 [exp] 229 / 4e-71 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.017G016700 [exp] 227 / 4e-71 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 207 / 2e-63 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.005G180200 [exp] 70 / 4e-13 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10021708 pacid=23180336 polypeptide=Lus10021708 locus=Lus10021708.g ID=Lus10021708.BGIv1.0 annot-version=v1.0 ATGGCTCCTACCCTGCTATCCTTTTGTCTTTCATCATGGCTGGTCGATGGTAACAGAATAGCAACCAAAATCAAAAGTGCATGCGATCCTGAAAATGTCA AATGGAAGAGCAACCCAACTATTGCTTGTCCAAATTGCAACCACAATATAGACAACAGTGATGTTGTACAAGCATGGCCAGGATTCCCCAGAGGGGTAAA ATTTGATCCAACTGATCAGGAAATTGTGTGGCATTTACTTGCAAAAGTTGGTAGTGGTGGTAAAGTACCTCATCCATTCATCGAGGAGTTCATACCAACT GTTGATAATCATGATGGAATTTGTTATACTCATCCGGAAAATCTACCAGGTGTCAAACAAGACGGAACTGCTTCTCACTTCTTTCATAGGGCAATCAAAG CTTACAATACAGGGACTCGAAAGCGCAGGAAGATTCAAGGTGCCGATCTTAGTGATTTCCGCTGGCACAAAACTGGCAGGACCAAGCCAGTGATCTTAGA TGGTGAGCAGAGAGGCTGCAAAAAGATTATGGTTCTTTACGCAAGTCTGGTAAGGGGAGGGAAAGCCGAGAAAACAAATTGGGTAATGCATCAATATCAC CTTGGAACGGCCGAGAACGAGGAAGATGGACAGTATGTGATTTCCAAGATATTTTACCAGCAACAACAACAGGCAACCAAGAGTGGTAAAGTTGAAGAAG AGTTAGCTGAAAACATAGATGCTTCTCCGGTTATTACGGAAGTCGATCCAGTCACTCCAATGTTGGTCATGCCTGATCCCCCTCGTACTGAAAAGAAGAA TTCTTTGGATTTTGACCTTGGGATAAACTCGGCCATTGCTGATATAGACGGCGAGCCTCTTACTCAGTATGCTGAGCTTGAACATCTAGAAGATGAGGAT GAGGTTCAACTCAATCCCAAGAACCGTAATCTGGATGAAATAACAGAAAATCAAGAACTCGAACATCTGGAAAATGATGTGGTCAAACCCGACCCTGGTA ATCTGGATGACCAACCAGTAACAGAAAATGATGATCATGGTGTTGGGGATGAGTCGATATGGTGGGCTGGGGAGTCACAGAACCTGCTGAGTTCACAACA GATGGTGGATGGTTTATCTTATTGTGAAGAATTCCTGAGGAGTCAGTCTCCTAGTAGAGATGGTAATGGAGATCCAATCCCAGATGGGAAATCTCATCTT GCTTCCCAATATGCAAAGCTAGGGGCAGAGGATTTAAAGAAGGATCTGGAGGAGTGCCAAAAACTCGTCCTTGACCCTGTGAATATATATCTCGACACCC CACCAGAGTTTAGACTGAGTCAGCTGGAATTCGGATCGCAGGAAAGCTTTGTTGCATGGGGAGGAGAGGTAAAATGA
AA sequence Show only first row Show all	>Lus10021708 pacid=23180336 polypeptide=Lus10021708 locus=Lus10021708.g ID=Lus10021708.BGIv1.0 annot-version=v1.0 MAPTLLSFCLSSWLVDGNRIATKIKSACDPENVKWKSNPTIACPNCNHNIDNSDVVQAWPGFPRGVKFDPTDQEIVWHLLAKVGSGGKVPHPFIEEFIPT VDNHDGICYTHPENLPGVKQDGTASHFFHRAIKAYNTGTRKRRKIQGADLSDFRWHKTGRTKPVILDGEQRGCKKIMVLYASLVRGGKAEKTNWVMHQYH LGTAENEEDGQYVISKIFYQQQQQATKSGKVEEELAENIDASPVITEVDPVTPMLVMPDPPRTEKKNSLDFDLGINSAIADIDGEPLTQYAELEHLEDED EVQLNPKNRNLDEITENQELEHLENDVVKPDPGNLDDQPVTENDDHGVGDESIWWAGESQNLLSSQQMVDGLSYCEEFLRSQSPSRDGNGDPIPDGKSHL ASQYAKLGAEDLKKDLEECQKLVLDPVNIYLDTPPEFRLSQLEFGSQESFVAWGGEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	0	1
AT4G37810			unknown protein		Lus10011570 [exp]	1.4	0.8439
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	1.7	0.8389
AT1G50660			unknown protein		Lus10043111 [exp]	2.6	0.8555
AT2G26470			unknown protein		Lus10038230 [exp]	4.9	0.8317
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	5.7	0.8137
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10037349 [exp]	5.8	0.7560
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	6.7	0.8096
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	6.9	0.8308
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	7.5	0.7869
AT1G12790			unknown protein		Lus10003529 [exp]	8.5	0.7688

Compare expression of checked genes

Lus10021708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.