Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 83 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 76 / 2e-16 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 72 / 6e-15 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 71 / 1e-14 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 69 / 5e-14 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 59 / 2e-10 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 56 / 2e-09 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 52 / 4e-08 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035058 [exp] 242 / 4e-80 AT1G75290 212 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032470 [exp] 158 / 6e-47 AT1G75290 226 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042968 [exp] 99 / 2e-25 AT1G75280 100 / 2e-24 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 81 / 3e-18 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 81 / 3e-18 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 80 / 5e-18 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 80 / 6e-18 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 80 / 2e-17 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 77 / 9e-17 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116500 [exp] 202 / 2e-64 AT1G75290 242 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G129800 [exp] 192 / 1e-60 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G050200 [exp] 165 / 4e-50 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 73 / 2e-15 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 72 / 6e-15 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 69 / 4e-14 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 68 / 1e-13 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103701 [exp] 67 / 3e-13 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 66 / 5e-13 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 65 / 1e-12 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10021709 pacid=23180317 polypeptide=Lus10021709 locus=Lus10021709.g ID=Lus10021709.BGIv1.0 annot-version=v1.0 ATGGGCGAAGGAGGTGTTGCCGATCGAGTTCAACGGACGGGGGAGGCGGCTTCGGGAAAAACCCTAGCCGCATTGAAGGCCTCTCAACAGGAGGAAATCC TAAATTCTACAAATCACAATATAATAATTCAATGCTGCAATTCTATAGCTTCTTGGCCTTACTACGACAATACACACCCTTCAGACGTCTCTCCTCCCAT TGACCACCTTCCCATCTACGCCGACGGCTCCATCAAAGCTTACTTAGTGACGGGACCTGACATTGGCAAGTTTGCCATCAAGGCTCTCGACAATGATCTC ACCATCAACAAGTCAGTCCATTTCCGACCGGATGTGAACTACTACAACATGAGCGGAGCTGGCTTCACTGTGGGAGAAGAAGATAGGAAGGCGCATCCCT CGAAGAATCAAATTCCGGAGAGCATTGTGGCATCTTTCACCCACGACATATTCGTAAAGGGCTATCAATCTAATTTCGAGATCAATGGGGTCAACGATCT GGAAGCCAGCGCTCTGTACCCGGATGAAGCTTTCGAGACCGTTGATCAAGTGTTCAGTGACTTTGCTCTCACAGTCCAACAGCAATAA
AA sequence Show only first row Show all	>Lus10021709 pacid=23180317 polypeptide=Lus10021709 locus=Lus10021709.g ID=Lus10021709.BGIv1.0 annot-version=v1.0 MGEGGVADRVQRTGEAASGKTLAALKASQQEEILNSTNHNIIIQCCNSIASWPYYDNTHPSDVSPPIDHLPIYADGSIKAYLVTGPDIGKFAIKALDNDL TINKSVHFRPDVNYYNMSGAGFTVGEEDRKAHPSKNQIPESIVASFTHDIFVKGYQSNFEINGVNDLEASALYPDEAFETVDQVFSDFALTVQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	1.0	0.9986
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	1.4	0.9764
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	3.9	0.9073
AT1G16290			unknown protein		Lus10037104 [exp]	4.2	0.8568
					Lus10024757 [exp]	5.0	0.8963
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	5.5	0.8468
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	6.5	0.8885
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	6.6	0.8965
					Lus10022950 [exp]	6.7	0.8331
					Lus10014474 [exp]	6.9	0.8935

Compare expression of checked genes

Lus10021709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.