Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68820 652 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G73950 590 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G18470 581 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT4G39050 55 / 1e-07 Kinesin motor family protein (.1) AT2G21380 54 / 2e-07 Kinesin motor family protein (.1) AT4G24204 49 / 4e-07 RING/U-box superfamily protein (.1.2.3) AT1G63900 47 / 2e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT5G19080 45 / 7e-05 RING/U-box superfamily protein (.1) AT3G06140 45 / 7e-05 RING/U-box superfamily protein (.1) AT1G79110 45 / 0.0001 BRG2 BOI-related gene 2, zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035057 [exp] 791 / 0 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10032471 [exp] 557 / 0 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 555 / 0 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10017969 [exp] 57 / 4e-08 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10027994 [exp] 55 / 7e-08 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10028790 [exp] 54 / 2e-07 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10008163 [exp] 50 / 3e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10001530 [exp] 48 / 2e-05 AT5G23110 5981 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10004419 [exp] 46 / 4e-05 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116400 [exp] 646 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.015G050300 [exp] 612 / 0 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.012G060100 [exp] 610 / 0 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.010G129932 [exp] 123 / 2e-33 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 59 / 7e-09 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.014G138000 [exp] 56 / 4e-08 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.009G122100 [exp] 55 / 1e-07 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.008G198300 [exp] 47 / 4e-05 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 46 / 5e-05 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 45 / 8e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [flax] [poplar] Tmemb_185A Transmembrane Fragile-X-F protein
Representative CDS sequence Show only first row Show all	>Lus10021710 pacid=23180292 polypeptide=Lus10021710 locus=Lus10021710.g ID=Lus10021710.BGIv1.0 annot-version=v1.0 ATGTTGGTGGAGAGGAGAGTGATAATGAGCTGGAGGAGAGTCGGGGAATCTCTTCATGGCCTTGTAGCTCATACCCTTCTCTTCTCTTTCACTCTCTTGC TTGCTCTCAAGTTGCAGCTCGCCGTTCCTTACTCATGGTGGGTTATATTTGCACCTTTGTGGCTGTTTCATGCAGTCACAGCTCGTGGCCGCTTTTCCTT ACCAGCTCCAGCAATGCCTCATGATCGTAACTGGGCGCCAATGCATGCTATATTGGCAACACCATTGCTTATGGCGTTTGAACTTCTCCTTTGCATACAC TTGGAAGGCCGTTATGGTACTACATCATCAGTCTATATGATGCAATCCCTTTTATTCCCGAACTTTATTGTTTCCCTTCTCGAATACCTTCATGTGAAAG TTACTTACGGTCATTGGTTGATGGATTTCGGTGGTGGATTGTTGCTCAAGTCCTCGAGCGCTGTGGACTTGAAAGTTGTCTTCATGCCATTGATAGCATT CGAAATGACAATTTTAATAGATAACATCAGCATGTGTAGAGCTCTTATGCCGGGTGATGAGGAAAACATGAGTGATGAGCAAATATGGGAGACACTTCCT CACTTCTGGGTTGCAATATCCATGGTCTTCTTCATTGCCGCAACAGTATTCACTCTCATGAAGTTATGTGGTGACGTGGCAGCTTTGGGTTGGTGGGATT TGTTTATCAACTATGGTATTGCACAGTGCTTTGCTTTCCTGGTCTGTACAAAGTGGTATAACCCATTGATTCATGCTCATTCCTACACCGAAGAGTCTAG TTCATCTTCAGCGAGTGTCAGATACCTCGACTGGAATAGGAGCCTAATTATTTCTTCAGATGAAGATCCAAGGAACATCAGAATGTGCAACCTGCAAGAT ATTGGTGGCCATTTTATGAAAATTCCTCTTATCGTTTTCCAGATAATGCTCTTCATGCGCTTGGAGGGAACACCTGCTGGTGCTAGACACATTCCAATTC CTTGTCTTTTTGCTCCACTTTTCATGATACAAGGGACTGGAGTCCTGTTTGCTGCCTATAGATTGGTTGAGAAAATCGTCCTTTTACTAAGTAGTGGAGC TTGCACTGGTAGCTCCTTCTATCTTGTGGCAAAGGCCAAGGAATTTCTTGGATTCCTACGGCATGGATCAAGGCTTCTTGGTTGGTGGTCAATTGATGAA GGAAGCAGGGAGGAGCAAGCTAGACTGTATCATGGAAGCACTTCTAGCTACAATACATTTTCTCCAGACTGTGTCAGGAAGATGCTGAAATCTGAACTTG TCGACGAGATATGGAAACTACAAGCTGTACTTAGCGAGCAAATGAACATATCAAAGTTTAGCCAAGAGGAATATGAAAGATTACAGAATGAAAAGATCTT GTGTAGAATATGCTTCGAGGAACAGATTAACGTTGTCATTCTTCCTTGTAGGCATCATGCCCTATGCGGAACATGCTGCGAGAAGTGCAAGAAGTGTCCA ATATGCCGGGTTGTTATCGAAGAGCGTATGCCTGTATGTGACGTGTAA
AA sequence Show only first row Show all	>Lus10021710 pacid=23180292 polypeptide=Lus10021710 locus=Lus10021710.g ID=Lus10021710.BGIv1.0 annot-version=v1.0 MLVERRVIMSWRRVGESLHGLVAHTLLFSFTLLLALKLQLAVPYSWWVIFAPLWLFHAVTARGRFSLPAPAMPHDRNWAPMHAILATPLLMAFELLLCIH LEGRYGTTSSVYMMQSLLFPNFIVSLLEYLHVKVTYGHWLMDFGGGLLLKSSSAVDLKVVFMPLIAFEMTILIDNISMCRALMPGDEENMSDEQIWETLP HFWVAISMVFFIAATVFTLMKLCGDVAALGWWDLFINYGIAQCFAFLVCTKWYNPLIHAHSYTEESSSSSASVRYLDWNRSLIISSDEDPRNIRMCNLQD IGGHFMKIPLIVFQIMLFMRLEGTPAGARHIPIPCLFAPLFMIQGTGVLFAAYRLVEKIVLLLSSGACTGSSFYLVAKAKEFLGFLRHGSRLLGWWSIDE GSREEQARLYHGSTSSYNTFSPDCVRKMLKSELVDEIWKLQAVLSEQMNISKFSQEEYERLQNEKILCRICFEEQINVVILPCRHHALCGTCCEKCKKCP ICRVVIEERMPVCDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	0	1
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	2.0	0.8360
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	3.2	0.8389
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	4.6	0.8046
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	5.5	0.8054
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	6.5	0.8304
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	7.1	0.8119
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	8.2	0.8201
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	9.8	0.7626
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	12.7	0.8006
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	13.0	0.7662

Compare expression of checked genes

Lus10021710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.