Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68800 101 / 3e-24 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT1G67260 94 / 8e-22 TCP TCP1 TCP family transcription factor (.1.2) AT3G18550 89 / 9e-20 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT1G53230 89 / 1e-19 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT1G30210 80 / 6e-17 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT2G31070 79 / 2e-16 TCP TCP10 TCP domain protein 10 (.1) AT4G18390 78 / 5e-16 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT3G15030 78 / 7e-16 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT3G02150 72 / 2e-14 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT5G60970 71 / 2e-13 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035055 [exp] 280 / 1e-93 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10003078 [exp] 88 / 1e-19 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 87 / 4e-19 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10042962 [exp] 87 / 7e-19 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10032465 [exp] 86 / 2e-18 AT1G68800 92 / 2e-20 BRANCHED 2, TCP domain protein 12 (.1) Lus10023297 [exp] 80 / 2e-16 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10000463 [exp] 79 / 3e-16 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10038512 [exp] 79 / 4e-16 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10032984 [exp] 75 / 4e-15 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130200 [exp] 114 / 2e-28 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 105 / 2e-25 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.017G112000 [exp] 100 / 1e-23 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.015G050500 [exp] 95 / 1e-21 AT1G68800 86 / 2e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.012G059900 [exp] 93 / 3e-21 AT1G68800 84 / 6e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.011G083100 [exp] 80 / 1e-16 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.019G091300 [exp] 80 / 1e-16 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.013G119400 [exp] 79 / 2e-16 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.004G065800 [exp] 79 / 4e-16 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.011G096600 [exp] 77 / 2e-15 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10021713 pacid=23180337 polypeptide=Lus10021713 locus=Lus10021713.g ID=Lus10021713.BGIv1.0 annot-version=v1.0 ATGTTCATCCCAAATCTTGATCCTACAGATACCCTAAACCCTAATAATCACACTCCCCCTACTACTACATCAGCCTCCTTAACCTCACTTGTTCATGAGG ATCATTACTACCATTATTTCTCCCCAAACCCCTTCCTTTATTATGCTCCTAATCATGACTTTCTTGATGATCCTTCCCCAATAATATTGGATCATGATCA AGATCATCGGCTTCCTCCTCCTCCTCCTCCCCCGATACCGGAGGAGGAGGAGGATGAGGAGGATAAGATGATGATGATGAAGAAGAAGAGATCAGAAGTG AAAGTTATTAGGAAGAGATCAACAAGTAGAGGAGGGAAGAAGGACAGGCACAGCAAGATCTACACGGCCAAAGGTGCTCGGGACCGGAGGATGAGGCTTT CTCTTCCAATCGCTCGAAGGTTCTTCGATCTCCAAGACATGTTGGGTTTCGATAAGGCTAGTAAGACCATTGAGTGGCTCTTCACCATGTCGAAATCCGC CATCCAGGATCTCCAAATCGACGTGTGTACTACTTGTAGTACTAGTACATGCTCGGAGATTAGTACTGAAGTAGTAGTTATGTCATCGGCCAAAAGTACT AGGAACGAGAAGGTTAAGATGGAATCATGTATAGCCAGCACGAAACATCGTTCAATCAGCAAGGAGGCAAGGGACAAGGCGAGGGCTCGAGCAAGGGAAC GAACTGCGGAGAAGAAGAACAAGAAGAAGAAGAAGAAGATGTTAGAGGAAAGTAGCTACTACTATAGCGGCCTACCTTGTTCATCAATTGTCGATGAGCA GTGCCCGCCATGTTCGAATTCCCTAAAAACCCCTATAAGTAGTGCTCTTCCATCATCTTCTTCTTCATTACTGGGTTTAGACTCTGGAGGATCCGAGTTG TTCATGATCATGGGCTCTCAATATTGGCAACAGGTATTCAAATAA
AA sequence Show only first row Show all	>Lus10021713 pacid=23180337 polypeptide=Lus10021713 locus=Lus10021713.g ID=Lus10021713.BGIv1.0 annot-version=v1.0 MFIPNLDPTDTLNPNNHTPPTTTSASLTSLVHEDHYYHYFSPNPFLYYAPNHDFLDDPSPIILDHDQDHRLPPPPPPPIPEEEEDEEDKMMMMKKKRSEV KVIRKRSTSRGGKKDRHSKIYTAKGARDRRMRLSLPIARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDVCTTCSTSTCSEISTEVVVMSSAKST RNEKVKMESCIASTKHRSISKEARDKARARARERTAEKKNKKKKKKMLEESSYYYSGLPCSSIVDEQCPPCSNSLKTPISSALPSSSSSLLGLDSGGSEL FMIMGSQYWQQVFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	1.4	0.8342
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	1.7	0.8232
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	4.2	0.7624
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	4.8	0.8432
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	7.9	0.7875
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	8.7	0.7506
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	10.8	0.8057
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	12.4	0.7609
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	14.0	0.8015
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	15.0	0.7814

Compare expression of checked genes

Lus10021713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.