Plant FIBer expression Database

Lus10021714 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25680 444 / 5e-149 unknown protein
AT5G23890 230 / 2e-64 unknown protein
AT5G52410 199 / 2e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035054
[exp]
981 / 0 AT3G25680 472 / 2e-161 unknown protein
Lus10014972
[exp]
214 / 4e-59 AT5G23890 700 / 0.0 unknown protein
Lus10038854
[exp]
214 / 5e-59 AT5G52410 709 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G131000
[exp]
547 / 0 AT3G25680 502 / 2e-173 unknown protein
Potri.015G145700
[exp]
221 / 3e-61 AT5G23890 709 / 0.0 unknown protein
Potri.012G142500
[exp]
207 / 2e-56 AT5G23890 650 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10021714 pacid=23180353 polypeptide=Lus10021714 locus=Lus10021714.g ID=Lus10021714.BGIv1.0 annot-version=v1.0
ATGGTCGAATCGTGGTTCTTTGTGGTCCAGTTAGTCACAACTCGGTCTGGTTTCGACATAACTGAGAAAACCCGAGAGTGGAGACTCGGACCGAACGATG
ATGTTCAGCTCACTGAACCCAAAGCAAAACAAAAATGGCATGAGGCCCGACTTACCAAAATCCACCCAGATATGAGCTCGTCGTCAGCAACCGGACATCC
ATCATCCCTCTTCCTCCGTCCGACCGACGCTCCTTCCTTTTCTCGGCGCCGCAATGTTGTCATCCTAAGCTCTTCAATTTCATTTCTCCGATCTAAAAAC
CCTAGTTTACTCCGCCTCTCTGCTACTCCCATCGATGGTCAACTTGACATCTCTTGGTTCCTCCCTACTCCTACTAACCCTCCCTCTCCCGATGCCCGCG
GCAATGATTTCAACGGCTGGGCCATCGTCGAAGTCCCTCCGTCGCCCAAGGAGGAGAAGAAAGGTACCTTAAAACTCTGTTTGTCGAAATTGAGTAAAGT
TTTTTCGCAAATTGTCTACTGCTTAAGTTCAGATGAAACTATCGCAGGACTTCCCAAGGGGGTAATTGGTGGAATTGGGGTTTGTGTTGCTGCGGCTGTT
GCCGCCGCTGCATTATTCTCACTCTCTAGAAGTGGTATTGATTCCAATGTTTGGAATGTCAATTCCATAGGATTTAGATTGCAACTTCGCAGCCCTAAGA
ATGCCATTGTAACTAATGAGGATATCGAAACCGAACCCGATGCTGAATCCAGGGACGTTGGTTTGGGTGATGAAGATGAGAGTGTTTCGGAGGTTATCCC
AGAGTCTATTGCTGAGCATCCTTTGGAATACGAAATATCTGCATCTAGATATAAGAATGAGCGTGCTCAAGTTTCAGTTGCTTTGGATTCAACTCAAATG
GAAGCTATTGTGAACTTGCAGAAACTGAAGATAATTGAAGACCACATAATGATTCATGACTTATGCACTAGAAGAGACTATGCAAGATGGTTGGTCCGCG
TAAATTCCCTACTTGAGAGAAATCCCAAGCATAGAATTGTGCCGACTATATCTTTGTCAGGATCACTTGCTGCTGCATTTGATGACGTTAACATTGATGA
TCCAGATTTCGTGTATGTTCAAGCTCTAGCGGAGGCTGGCATCATACCAAGTAAATTGTCTTCAGCAAGTTTGTTTTCTGATACTGCAAAAGATGGAATC
TCTTACTTTTACCCAGATAGGCACCTTTCTCGTAAAGATATGATCAACTGGAGAACTCAGCTAGAATATGGCATCTCGCCAGGAACAAAAGAGCAGATGT
CAAGAATAAGAGCAGATTACATTGATGTGAAGGCAATCACTTCAGATGCATCGCCTGAATTTTTCACTGACATGCTGGCTGGCGAGAAAAGTATAATCAG
AAAAGTTTTTGGACAGAGCAGGCGTTTTCAGCCAAATAAACCATCAACCAAGGCACAAGCAGCTGTGGCACTAACTAGTGGCAGAATGACGGAGGCAGTT
CATGGCGAATTATACAGACTGGAAGCAGAGAGTTCTTCAAGGCAAGCTGCAATTGAAGAAATTAGGTCCGAGTTACTTGAAAGGGGAGATATAGTAAATT
TTTGGAATGAGAAGCTGCTAGCAGAAAGAAACCGTTTAATCGAGGAGCAGGAGCTCTACACTACCACCTTACAGGATTTGGATATAGAGAAGGATGTTAA
GGTCAGATCTTTGGCAGAGAACACGAAGGAGAAGGCAGCTATGGAGTGTCAGAGACAACTGATTCTAACTCTTAGGCAAGAGATTGATGAGATGTCAGAA
AGGCTTACATCTGAAAGGGCTGCATATGTGGCTGAGCAATCTAATATTCCGGAGTTGAGGAAAGCAGCAATGACTAATCTGGAAGGAGTTCTTGATGCCA
AATCCATATTGGAAGCTGAAATTGAAGCTTTAAAAACGCTCAGGACTTGGGTAGAAGATGAAGCAAAGAAAAGCCAGGCGCGCTCTAAAGTTCTTGAGGA
GGTAGGTCGTAGGTGGAAATGGGACAACTGA
AA sequence
>Lus10021714 pacid=23180353 polypeptide=Lus10021714 locus=Lus10021714.g ID=Lus10021714.BGIv1.0 annot-version=v1.0
MVESWFFVVQLVTTRSGFDITEKTREWRLGPNDDVQLTEPKAKQKWHEARLTKIHPDMSSSSATGHPSSLFLRPTDAPSFSRRRNVVILSSSISFLRSKN
PSLLRLSATPIDGQLDISWFLPTPTNPPSPDARGNDFNGWAIVEVPPSPKEEKKGTLKLCLSKLSKVFSQIVYCLSSDETIAGLPKGVIGGIGVCVAAAV
AAAALFSLSRSGIDSNVWNVNSIGFRLQLRSPKNAIVTNEDIETEPDAESRDVGLGDEDESVSEVIPESIAEHPLEYEISASRYKNERAQVSVALDSTQM
EAIVNLQKLKIIEDHIMIHDLCTRRDYARWLVRVNSLLERNPKHRIVPTISLSGSLAAAFDDVNIDDPDFVYVQALAEAGIIPSKLSSASLFSDTAKDGI
SYFYPDRHLSRKDMINWRTQLEYGISPGTKEQMSRIRADYIDVKAITSDASPEFFTDMLAGEKSIIRKVFGQSRRFQPNKPSTKAQAAVALTSGRMTEAV
HGELYRLEAESSSRQAAIEEIRSELLERGDIVNFWNEKLLAERNRLIEEQELYTTTLQDLDIEKDVKVRSLAENTKEKAAMECQRQLILTLRQEIDEMSE
RLTSERAAYVAEQSNIPELRKAAMTNLEGVLDAKSILEAEIEALKTLRTWVEDEAKKSQARSKVLEEVGRRWKWDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25680 unknown protein Lus10021714
[exp]
0 1
AT3G55005 TON1B tonneau 1b (TON1b) (.1) Lus10030297
[exp]
1.0 0.8867
AT2G38660 Amino acid dehydrogenase famil... Lus10043398
[exp]
2.2 0.8204
AT3G28760 unknown protein Lus10005250
[exp]
4.7 0.8497
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Lus10013100
[exp]
4.7 0.7788
AT1G10310 NAD(P)-binding Rossmann-fold s... Lus10042410
[exp]
6.0 0.8294
AT4G04880 adenosine/AMP deaminase family... Lus10020056
[exp]
10.2 0.8140
AT3G12170 Chaperone DnaJ-domain superfam... Lus10026315
[exp]
10.7 0.8152
AT5G41480 EMB9, ATDFA, GL... GLOBULAR ARREST1, EMBRYO DEFEC... Lus10014939
[exp]
12.0 0.8496
AT1G73090 unknown protein Lus10037331
[exp]
12.5 0.7923
AT3G10540 3-phosphoinositide-dependent p... Lus10028834
[exp]
13.6 0.8018

Lus10021714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.