Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26100 211 / 8e-69 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT5G38630 137 / 1e-39 ACYB-1 cytochrome B561-1 (.1) AT4G25570 105 / 2e-27 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G14730 74 / 6e-16 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003076 [exp] 140 / 2e-41 AT5G38630 281 / 2e-97 cytochrome B561-1 (.1) Lus10038866 [exp] 132 / 1e-37 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 133 / 2e-37 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10039216 [exp] 127 / 6e-36 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034074 [exp] 126 / 8e-35 AT5G38630 287 / 7e-98 cytochrome B561-1 (.1) Lus10027461 [exp] 110 / 5e-29 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10028996 [exp] 81 / 4e-18 AT4G25570 145 / 4e-43 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 77 / 7e-17 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 69 / 1e-13 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131100 [exp] 232 / 9e-77 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G115200 [exp] 230 / 6e-76 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.017G111700 [exp] 147 / 2e-43 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.004G103800 [exp] 141 / 2e-41 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.008G115300 [exp] 116 / 1e-31 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.012G141000 [exp] 110 / 1e-29 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 107 / 3e-28 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G102400 [exp] 77 / 4e-17 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 77 / 6e-17 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10021715 pacid=23180341 polypeptide=Lus10021715 locus=Lus10021715.g ID=Lus10021715.BGIv1.0 annot-version=v1.0 ATGGCTCCATCCCATCCATTTACACTTCCATTTCTCCTCTTAGCCAGAATCTCTGGTCTCACTGTTGCAGCTTTACTCCTCTACTGGGCTCTCCTTTCCT ACTCTTCCTCTCAACATTCCCTCGTTTACGCTGTAAAAGCAGATCAAGCTCGGCATCCGCTGCTGATGGTGATCGGTTTCATTCTTGTCAGTGGAGAAGC AATTCTGGTACACAGATGGCTGCCCTGTTCGAGGAACGGGAGGAAATTGGTGCATCTGGGTCTGCAAGGAGTGGCTTTGAGCTGTGGGGTGTTAGGGTTG TGGACTAAATTCCATGGGAGTAAGGGGTTTTGGGCAAACTTCTTAAGCTTGCATTCCTGGATGGGATTGCTCTGCATTTCCTTGTTTGCTGCCCAGTGGC TGATGGGGATGGTGAGCTTCTGGTACAGAGGGGAGATCATGCGAACGGTAAGGATGAGCAGATTGCCATGGCACATCTTTGTTGGACTCTACACTTACGC TCTTGCAATTGCTACTGCTGAGACTGGCCTTCTCGAGAGGATCACTTCCCGGCAAATGAAAGCCAATTCTACTGTTTCCAAACGTTCTCCAGAATCATTG GTTGCGAATGGATTAGGAGTAGGGTTGTTTTTGCTTGCTGGACTCCTAATATCGGCTGCAATTTCTCCTAAGCACCAACGTAAACCTCTCTATTCTCTGC CAACAAACCTCAAGTGTTTGTCTTCCTGA
AA sequence Show only first row Show all	>Lus10021715 pacid=23180341 polypeptide=Lus10021715 locus=Lus10021715.g ID=Lus10021715.BGIv1.0 annot-version=v1.0 MAPSHPFTLPFLLLARISGLTVAALLLYWALLSYSSSQHSLVYAVKADQARHPLLMVIGFILVSGEAILVHRWLPCSRNGRKLVHLGLQGVALSCGVLGL WTKFHGSKGFWANFLSLHSWMGLLCISLFAAQWLMGMVSFWYRGEIMRTVRMSRLPWHIFVGLYTYALAIATAETGLLERITSRQMKANSTVSKRSPESL VANGLGVGLFLLAGLLISAAISPKHQRKPLYSLPTNLKCLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	0	1
					Lus10025143 [exp]	2.0	0.8022
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	4.7	0.7665
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	8.5	0.7319
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	11.4	0.7649
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10038941 [exp]	11.5	0.6743
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	18.2	0.7274
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	19.2	0.7628
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	20.2	0.7489
AT1G19240			unknown protein		Lus10034891 [exp]	21.2	0.7225
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	26.8	0.7082

Compare expression of checked genes

Lus10021715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.