Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 753 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 739 / 0 O-fucosyltransferase family protein (.1) AT1G14020 605 / 0 O-fucosyltransferase family protein (.1) AT2G03280 558 / 0 O-fucosyltransferase family protein (.1.2) AT2G37980 389 / 7e-129 O-fucosyltransferase family protein (.1) AT5G01100 379 / 5e-125 O-fucosyltransferase family protein (.1) AT3G54100 378 / 1e-124 O-fucosyltransferase family protein (.1) AT1G22460 375 / 1e-124 O-fucosyltransferase family protein (.1) AT5G35570 372 / 3e-122 O-fucosyltransferase family protein (.1) AT5G64600 359 / 9e-119 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034651 [exp] 985 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 869 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 867 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 629 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 623 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 622 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 622 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 585 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 578 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048100 [exp] 839 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 835 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 776 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 763 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 605 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 593 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 397 / 6e-131 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 391 / 7e-131 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 385 / 3e-127 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 378 / 5e-126 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021717 pacid=23180320 polypeptide=Lus10021717 locus=Lus10021717.g ID=Lus10021717.BGIv1.0 annot-version=v1.0 ATGTGCAGGGTTGAAGGGAGTGAGAGGAAGAGTGTTGAAACTGGACAAGGTAAAGAGAGATTGAAGAAGAAGGATATGGGTGGAATGGTTAAAGGAGTGG ATAGCAAGGTTAAGAGTTTGCCAAAGTCTAAGATGAAGCTGTGGATCATTCGTGCCACTACTTCGGTCTTGTTGTGGACCTGTATCGTTCAATTGACGAC GGTCGGCGAATTGTGGGGGCCTAGGGTTTTGAAAGGATGGCCTTCGTGTTTCACATCCGAATCAGCTGCTCTTATGGAGGAGAAAGTTTCTGCCATTCCT GCTCTCGTTTTGCCGCCCAAGAGGGTTTACAGAAACAACGGATATCTTATGGTATCCTGCAATGGAGGACTGAATCAAATGAGGTCTGCGATATGTGACA TGGTCGCTATAGCAAGATACTTGAATGTCACTCTTATTGTCCCGGAGTTGGACAAGACATCTTTTTGGGCTGATCCCAGTGAATTCCAAGACATATTTGA CGTTGATCATTTCATCACATCGCTCAGAGATGAGGTTCGGATATTGAAGGAATTACCTCCTCGGCTTAAGAGGAGAGTGGAACTAGGGATGGCTCACTCC ATGGCACCGGTTAGTTGGTCGGATATATCCTACTATGGTACCCAGATTCTTCCTCTAATACAGAAGTACAAAGTGGTTCATCTAAATAGAACGGATGCTA GACTTGCAAATAATAATCAGCCTCTGGAGATTCAGAAGCTACGCTGTCGAGTGAATTTCGGAGCACTTAGATTCACTCCTCAGATTGAGGAGTTGGGTAG AAGAGTTATAGGACTTCTCAAGGATAATGGCCCTTTCTTAGTGCTTCACCTTAGATATGAAATGGATATGTTGGCATTCTCTGGTTGCACTCAAGGTTGT AACGGTGAAGAGGTGGATGAGCTGACGAGAATGAGATATGCTTATCCTTGGTGGAAAGAGAAGGTAATAAATTCCGACCTGAAGAGGAAAGATGGACTAT GCCCTTTGACTCCAGAGGAGACTGCCCTCACTCTAAGGGCACTGGACATTGACCCAAACATGCAGATCTACATAGCAGCTGGCGAAATATACGGCGCAGA GAGGAGGATGGCAAGTCTTTTAGCAGCGTATCCAAAACTGGTGAGAAAGGAAACACTATTGGAACCATCAGACCTCAGGTTCTTTCAGAATCACTCCTCC CAGATGGCAGCTTTGGATTATCTTGTTTCGCTGGAGAGTGACATTTTTGTGCCCACCTATGATGGAAACATGGCCAAAGTTGTTGAAGGCCACCGCAGAT TTCTTGGATTTAGGAAGACAATATTGCTCCAGCGAAGTCTTCTTGTCGATTTGATAGACCGATACACCAACGGGGCACTGAGTTGGGACGAGTTTTCGGA TGCTGTGAAGGAAGCTCATTCCACAAGGATGGGAACCCCTGGTAAAAGGTTAGTGATCCACGACAGGCCTAAGGAAGAGGATTACTTCTATGCCAACCCG GAAGAATGTCTGCAATCATCGTCCGGAGAGCTTTTGAGTAGTACGTGA
AA sequence Show only first row Show all	>Lus10021717 pacid=23180320 polypeptide=Lus10021717 locus=Lus10021717.g ID=Lus10021717.BGIv1.0 annot-version=v1.0 MCRVEGSERKSVETGQGKERLKKKDMGGMVKGVDSKVKSLPKSKMKLWIIRATTSVLLWTCIVQLTTVGELWGPRVLKGWPSCFTSESAALMEEKVSAIP ALVLPPKRVYRNNGYLMVSCNGGLNQMRSAICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRDEVRILKELPPRLKRRVELGMAHS MAPVSWSDISYYGTQILPLIQKYKVVHLNRTDARLANNNQPLEIQKLRCRVNFGALRFTPQIEELGRRVIGLLKDNGPFLVLHLRYEMDMLAFSGCTQGC NGEEVDELTRMRYAYPWWKEKVINSDLKRKDGLCPLTPEETALTLRALDIDPNMQIYIAAGEIYGAERRMASLLAAYPKLVRKETLLEPSDLRFFQNHSS QMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGFRKTILLQRSLLVDLIDRYTNGALSWDEFSDAVKEAHSTRMGTPGKRLVIHDRPKEEDYFYANP EECLQSSSGELLSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	2.8	0.8667
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	3.2	0.8601
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	5.3	0.8613
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	5.5	0.8691
AT4G35320			unknown protein		Lus10026561 [exp]	9.2	0.8646
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	9.8	0.8448
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	12.7	0.8525
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	14.1	0.8527
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	14.1	0.8459
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	15.0	0.8536

Compare expression of checked genes

Lus10021717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.