Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73880 314 / 1e-104 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT1G51210 239 / 6e-76 UDP-Glycosyltransferase superfamily protein (.1) AT5G03490 238 / 3e-75 UDP-Glycosyltransferase superfamily protein (.1) AT1G06000 146 / 2e-40 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 143 / 7e-39 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36760 140 / 8e-38 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G16890 136 / 1e-37 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G14860 137 / 1e-36 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 137 / 2e-36 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 134 / 1e-35 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034650 [exp] 577 / 0 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10036837 [exp] 231 / 5e-72 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10036840 [exp] 231 / 5e-72 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10013500 [exp] 217 / 1e-66 AT1G73880 379 / 2e-127 UDP-glucosyl transferase 89B1 (.1) Lus10007972 [exp] 180 / 2e-53 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10026927 [exp] 154 / 5e-43 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 154 / 8e-43 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014402 [exp] 142 / 1e-38 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10026926 [exp] 135 / 7e-36 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065100 [exp] 329 / 2e-110 AT1G73880 539 / 0.0 UDP-glucosyl transferase 89B1 (.1) Potri.010G137000 [exp] 266 / 7e-86 AT5G03490 482 / 4e-168 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G303600 [exp] 160 / 2e-45 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 154 / 6e-43 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.018G008900 [exp] 152 / 2e-42 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 150 / 2e-41 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.006G272600 [exp] 150 / 2e-41 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 148 / 6e-41 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 147 / 1e-40 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 145 / 6e-40 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021718 pacid=23180312 polypeptide=Lus10021718 locus=Lus10021718.g ID=Lus10021718.BGIv1.0 annot-version=v1.0 ATGACGGTGGCCGTCACCACCGTCCCGCACATTCTCATCTTCCCATTCCCAGCCCAAGGTCACCTCATCCCAATCCTAGACTTCACCCATTACCTTGCCC TCCGCCGTCAACTTCAAATCACAATCCTCGTCACCCCTAAAAACCTCCCTCTCCTCCAGCCCCTCCTCTCCCGCCACCCCTCCATCCAACCCCTCACCCT CCCTTTTCCGGACAGCCCTGGCATCCCTCCCGGCGTAGAAAACACCAAAGACCTCCCTCCTTCCTCAACCAAATCAGCTCATGTCTCCTTCATGAACGCC CTCTCCGGCCTCCGCTCCCCTCTTCTCAATTGGTTTCAAACCACCCCTTCCCCTCCTTCCGTCATCATTTCCGACATGTTCCTCGGCTGGACTCACCACC TCGCCTCCGACCTCGGCATCCCACGAATCGTCTTCTCCCCTTCCGCCGCCTTCGCCTTGTCGGTAATCTACCACCTCTGGCGTAACATGCCTCAGCTCCC CGAGAACCCCAGCGAATCAATCACGTTCCCAGATCTCCCGAATTCCCCCAATTGGATTAAGTCCCAGCTCTCCCCCATTTACCGCTCCTACGTGCCCGGA GATCCCCAATCTGAACTCGTGAAAGATGGTTTCCTCGCTGATATCGACAGCTGGGGAATCGCGTTCAATTCGTTCGCCGGCTTGGAATCGAAATATCTAG AGTATTTGAAAATCGAATTGGGCCACGATCGGGTCTGGGCGGTGGGTCCTTTACTCTCGCCGCCGTCAGAATCGGTCGCTTCAAGAGGTGGGACCAGTTC GGTATCAGTACCCCATCTCGAGGCGTGGCTCGACACGTGTCCGGACGATAAGGTGGTTTACGTCTGCTTCGGGAGCGAGGCGGTGCTGACCGAAGATCAG AGCAATAAGCTGGCATCGGGGTTGAGAAGAGCGGGGTGCAATTCGTGTGGAGGGTGA
AA sequence Show only first row Show all	>Lus10021718 pacid=23180312 polypeptide=Lus10021718 locus=Lus10021718.g ID=Lus10021718.BGIv1.0 annot-version=v1.0 MTVAVTTVPHILIFPFPAQGHLIPILDFTHYLALRRQLQITILVTPKNLPLLQPLLSRHPSIQPLTLPFPDSPGIPPGVENTKDLPPSSTKSAHVSFMNA LSGLRSPLLNWFQTTPSPPSVIISDMFLGWTHHLASDLGIPRIVFSPSAAFALSVIYHLWRNMPQLPENPSESITFPDLPNSPNWIKSQLSPIYRSYVPG DPQSELVKDGFLADIDSWGIAFNSFAGLESKYLEYLKIELGHDRVWAVGPLLSPPSESVASRGGTSSVSVPHLEAWLDTCPDDKVVYVCFGSEAVLTEDQ SNKLASGLRRAGCNSCGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	0	1
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	1.7	0.8550
					Lus10012740 [exp]	2.8	0.8560
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	3.7	0.8566
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	5.7	0.7964
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	6.7	0.7748
					Lus10019699 [exp]	7.7	0.7266
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	10.2	0.7628
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	11.2	0.7466
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10027573 [exp]	13.9	0.7713
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	17.9	0.7567

Compare expression of checked genes

Lus10021718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.