Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 785 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034647 [exp] 1177 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 809 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1) Lus10013332 [exp] 560 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 545 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10013333 [exp] 543 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10013336 [exp] 190 / 1e-53 AT1G73990 231 / 2e-69 signal peptide peptidase (.1) Lus10013335 [exp] 141 / 2e-38 AT1G73990 174 / 7e-51 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 822 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10021721 pacid=23180354 polypeptide=Lus10021721 locus=Lus10021721.g ID=Lus10021721.BGIv1.0 annot-version=v1.0 ATGTCCAATCTCCTCCTCCTGTACTCTTCTCCTCACCTCACAGCCTTCAGTCCCCAAACATTCACTCCCCTTCTTCTCTCCTCCAAGTCTCCCCGTTCTT ACTCCGCCACCCACCGCCGACTGATTTCTCCATCCACTCCTACTCCTCTCCTTCATTCCAAACTCCGCTGGAAGAGCATATCTGTTCGCGCCTTTGATGA GACTAAAACAGGAGAGGAAACGAAAATCGAGTCGGAGGATGATAAACAGGATGAAGCTACAATCGCGAAGAAGCCTGTCGTCGATTATCCTGAGGGAGAG TTTGAGTTCAAGGAGGCTGGGCTTTGGACTGCCTTTCTAGTGAAGATTCGGATGTTGTTTGCTCTACCTTGGGAGCGAGTCAAGAAGGGCAGTGTTCTCA CTATGAAATTAAGGGGCGAGATATCTGATCAGCTAAAGAGTCGTTTCTCTTCAAGGCTATCTCTGCCTCAGATTTGTGAGAATTTCATTAAAGCTGCTTA TGATCCTCGCATTTCCGGTATTTATCTGCATATAGACTCTTTAGCTTGTGGTTGGGGTAAAGCTGAAGAAATCCGGAGGCATATATTGGATTTCAAGAAA TCAGGGAAGTTCATTGTTGCCTACACCCCTACTTGCGGGGAGTTGGAGTACTATCTAGCTTGTGCTTGTTCGGAGTTATATGCCCCTCCGAGTGCCTATT TCTCGTTATACGGCTTTGCTGTTCAATCAGTTTCTATTGCAGGTGTCCTTGAGAAAGTTGGGATTCAACCGGAAGTGCAGAGGATCGGTAAATACAAAAG TGCGGGTGATCAACTAATCCGTAAAAGTATGTCGGAAGCAAACTGTGAGATGCTGACTGCATTACTTGATGACATCTACGGGAATTGGCTGGACAAAGTT TCTTCTGAAAAAGGCAAAACAAGAGAAGATTTGGAGAACTTCATTAGTGAAGGAGTCTACCAAGTCGAGAGGCTGAAAGATGATGGCTTGATCACAGATA TACTCTATGATGATGAGGTCACTTCACTGTTGAAAGAGAAACTTGGTGTTAAAAAGGAGAAAGATCTTCCTACTGTTGATTACAGGAAATATTCACGAGT TGGGACCTGGACTCTTGGTTTAACAGGTGGTAAAGACCAAATAGCCGTGATCCGTGCATCTGGGTCCATTAGTCGTGTTCGAGGTTCATTTAGTTCTAGC GGTATCATCGGCGAGCAATTTATTGAGAAGATCCGATCTGTCAGAGAATCTAAAAGATATAAAGCTGCTATCATCAGAATTGACAGTCCCGGAGGTGATA CCCTAGCATCTGACTTAATGTGGAGGGAAATCCGTCTTTTAGCTGCTTCCAAACCTGTAGTCGCTTCAATGGTTGATGTTGCAGCAAGTGGAGGGTACTA TATGGCAATGGCAACAGATGCTATCGTTGCTGAAAATTTGACCATAACCGGTTCCATCGGTGTAGTTGCAGCAAAGCCCGCCTTCGGGAAGCTTTATGAA AAAATCGGGTTCAACAAGGAGATCATATCCAGGGGAAGATATGCGGAACTTTTTAAAGCTGACCAGCGACCTTTCAACCCTGATGAAGCAAAGCTATTTG AAAAGTCAACTCAGAATGCATACAAGCAATTTCGTGACAAGGCTGCACTTTCAAGATCGATGGATGTGGATGAGATGGAAAGTGTGGCACAAGGCAGAGT CTGGACGGGTATACAAGCAGCATCGCGAGGTCTAGTTGATGCAACCGGCGGCCTTTCACGTGCCATCGCTATCGCAAAACTCAAGGCCAATATACCTCAA GACAAACCGGTAACCCTCGTGGAGTTGTCGAGGCCGGCTACAACTCTACCAGAGCTGTTAAGTAGCATAAGCAGCTCGTTTAGTGGAGTTGACAGCAGTC TGAGAGAAGTAGTGCAGGAGTTGACGGTTAGTGAAGGAGTTCAAGCGAAGATGGAAGGAATAATGTTCCAAAGATTGGGAGGAGGAGGTGGTCCATATGG AAACCCCATTATTAGTTTGATAGAAGAGATTTTAGGATCCATTTGA
AA sequence Show only first row Show all	>Lus10021721 pacid=23180354 polypeptide=Lus10021721 locus=Lus10021721.g ID=Lus10021721.BGIv1.0 annot-version=v1.0 MSNLLLLYSSPHLTAFSPQTFTPLLLSSKSPRSYSATHRRLISPSTPTPLLHSKLRWKSISVRAFDETKTGEETKIESEDDKQDEATIAKKPVVDYPEGE FEFKEAGLWTAFLVKIRMLFALPWERVKKGSVLTMKLRGEISDQLKSRFSSRLSLPQICENFIKAAYDPRISGIYLHIDSLACGWGKAEEIRRHILDFKK SGKFIVAYTPTCGELEYYLACACSELYAPPSAYFSLYGFAVQSVSIAGVLEKVGIQPEVQRIGKYKSAGDQLIRKSMSEANCEMLTALLDDIYGNWLDKV SSEKGKTREDLENFISEGVYQVERLKDDGLITDILYDDEVTSLLKEKLGVKKEKDLPTVDYRKYSRVGTWTLGLTGGKDQIAVIRASGSISRVRGSFSSS GIIGEQFIEKIRSVRESKRYKAAIIRIDSPGGDTLASDLMWREIRLLAASKPVVASMVDVAASGGYYMAMATDAIVAENLTITGSIGVVAAKPAFGKLYE KIGFNKEIISRGRYAELFKADQRPFNPDEAKLFEKSTQNAYKQFRDKAALSRSMDVDEMESVAQGRVWTGIQAASRGLVDATGGLSRAIAIAKLKANIPQ DKPVTLVELSRPATTLPELLSSISSSFSGVDSSLREVVQELTVSEGVQAKMEGIMFQRLGGGGGPYGNPIISLIEEILGSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	1.0	0.9301
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	2.8	0.9099
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	3.2	0.9264
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	4.2	0.9177
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	6.3	0.8966
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	6.7	0.8925
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	7.7	0.8883
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	9.2	0.8743
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	9.2	0.8860
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10009921 [exp]	9.9	0.8513

Compare expression of checked genes

Lus10021721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.