Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17970 156 / 1e-44 RING/U-box superfamily protein (.1) AT1G73760 153 / 2e-43 RING/U-box superfamily protein (.1) AT2G15530 115 / 1e-28 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 109 / 2e-26 RING/U-box superfamily protein (.1) AT5G42940 108 / 6e-26 RING/U-box superfamily protein (.1) AT3G15070 106 / 2e-25 RING/U-box superfamily protein (.1.2) AT1G45180 105 / 4e-25 RING/U-box superfamily protein (.1) AT5G10650 103 / 2e-24 RING/U-box superfamily protein (.1.2) AT4G31450 103 / 2e-24 RING/U-box superfamily protein (.1) AT1G53190 100 / 4e-23 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034644 [exp] 389 / 4e-137 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10007967 [exp] 214 / 2e-68 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10013497 [exp] 210 / 6e-67 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10010372 [exp] 108 / 5e-26 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 105 / 4e-25 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10026941 [exp] 104 / 1e-24 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10042443 [exp] 102 / 8e-24 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10020145 [exp] 96 / 7e-22 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10024810 [exp] 92 / 2e-20 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053800 [exp] 222 / 1e-69 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 218 / 3e-68 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 116 / 1e-28 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 110 / 7e-27 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 110 / 9e-27 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.007G045500 [exp] 107 / 8e-26 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 107 / 2e-25 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.006G274700 [exp] 102 / 4e-24 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 102 / 6e-24 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.009G100100 [exp] 102 / 7e-24 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021722 pacid=23180263 polypeptide=Lus10021722 locus=Lus10021722.g ID=Lus10021722.BGIv1.0 annot-version=v1.0 ATGCTAGCTCTCTACTCTTCTCCTAAGAAGAAACGATCCTTTAAACCAGTACTGATGCCAGAGGAGAGTAGCAACGCCACCAACGCTGCGGCCGGCGGCA AGAAGATGAAGAAGAACGCAACGGTCAGTGGATCGGGATGCACTGCTGAAGTGTCCCGGAAGGTTTCGGTGCCAGCGGCGATCAGGTCGTCGGCTGATTG GGAATGGAAGAAGGTGAAAGTGAAGAAGATGAACCAAACAGCTGCTTTCGCTGCTTCTACTGCCTCTCGTCCTCTTATTCCTCCTCCGCCACAATCGAAG CTGCAGAGGACGACGATGGAGAAGGAGGAGATCGGGACAAGCGAACTGCTCCAGATCGTTGATTCTGTAGGCTCTATCGCTACGAGAAGAAACGTTTCAA GGAGAGGGAAGATTGCAATCAATCCGAGGGAGAGAGAGATGGTAATCGAGAAATCTTGTCCACCGAGGCCAACAGCTGTCGACCCTGAAGTTTTTCCTGC TCCAATTGGAATATTAAGGCCAGAACCAGAACTACTTCGGAGTAGGTATTACGGGAAATTTCGACGTCGTGATGGACTTGCTGAGATGTTAATGCTCGTT AATGGTTTCAAGATGGAAGGACGACAGGATAGGTATCATGATGACTGGAGACTTGACATTGATGATTTTTCATATGAGCAACTACTCGCCCTAACTGATA GGATTGGGTACGTAACTACGGGGCTGAAAGAAGATGAGATTGGCAAATGCATCAGTCAGTTTAAGCTCTCAGTCCTTGGTGAACTTTCGTGCCAAATTGG TACCACATTGGGCAAGAAATGCACCGTTTGTCAGGAGGAGTTTGAAAGAGATGATGAGCTGGGGAAGCTGGAATGTGGGCATGGCTTCCACCTTGAGTGT ATCAAGCAGTGGCTAGCTAATAAAAACACCTGCCCAGTATGCAAAACTGAACCATTTGCTAGGAGCTAA
AA sequence Show only first row Show all	>Lus10021722 pacid=23180263 polypeptide=Lus10021722 locus=Lus10021722.g ID=Lus10021722.BGIv1.0 annot-version=v1.0 MLALYSSPKKKRSFKPVLMPEESSNATNAAAGGKKMKKNATVSGSGCTAEVSRKVSVPAAIRSSADWEWKKVKVKKMNQTAAFAASTASRPLIPPPPQSK LQRTTMEKEEIGTSELLQIVDSVGSIATRRNVSRRGKIAINPREREMVIEKSCPPRPTAVDPEVFPAPIGILRPEPELLRSRYYGKFRRRDGLAEMLMLV NGFKMEGRQDRYHDDWRLDIDDFSYEQLLALTDRIGYVTTGLKEDEIGKCISQFKLSVLGELSCQIGTTLGKKCTVCQEEFERDDELGKLECGHGFHLEC IKQWLANKNTCPVCKTEPFARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17970			RING/U-box superfamily protein...		Lus10021722 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	7.0	0.7851
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	8.2	0.7751
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	9.3	0.7500
AT3G50860			Clathrin adaptor complex small...		Lus10024011 [exp]	25.7	0.7206
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	25.9	0.7405
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	28.8	0.7292
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	29.5	0.7455
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	33.7	0.7151
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	34.7	0.7292
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	35.7	0.7023

Compare expression of checked genes

Lus10021722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.