Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17650 225 / 1e-73 Polyketide cyclase / dehydrase and lipid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042651 [exp] 362 / 6e-128 AT4G17650 228 / 4e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1) Lus10009758 [exp] 298 / 1e-102 AT4G17650 288 / 1e-98 Polyketide cyclase / dehydrase and lipid transport protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126000 [exp] 259 / 3e-87 AT4G17650 288 / 2e-98 Polyketide cyclase / dehydrase and lipid transport protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10021724 pacid=23154305 polypeptide=Lus10021724 locus=Lus10021724.g ID=Lus10021724.BGIv1.0 annot-version=v1.0 ATGCCACCGTTCAGCTCAACTTCGAAACCGCTCCGTTCTTTAATAGCCACTACGGCTCGATCGAGACATTTTATCCGCCCAGCGAAACACGATCAAATTC GATGCACCAGAACCGTTGCCAGAGTCTCGGCCCCATTGAGTAACACGGGAATCGATTGCTCTAGGTATTTCAATTCCACGTTATTGGGGAGCTCGTACAG CGGGAGCAGTGCTGTTCAACGCAGGGGGTTCCTCGGGTGCGGAGATGGAGAAGAAGGCGGTGTTTTGTCCAAGGTCTACGAAGAGAGACGCGTTTTGGGA TATTCTCCTGAGCAATTGTTTGACGTGGTTGCGGCGGTCGATTTCTATCATGGGTTTGTGCCTTGGTGTCAGCGGTCTGACATCCTCAAACGTTACCCAG ATGGATCATTTGATGCGGAACTGGAGATTGGTTTCAAGTTTTTGGTCGAGAGCTATGTTTCTCACGTTGAATTGGAGAGACCAAAAATGCTCAAGACTAC GGCATCCCAGAGCGGTCTTTTTGATCACTTGATTAACATATGGGAATTTAACCCAGGACCTGTACCTGGCAGTTGTGATCTCTACTTTTTGGTAGATTTT AAGTTCCAGTCACCACTCTACAGACAGGTATGCCATACTGTGGTGTTCAAACTTTTGAAACATGGGCGTCTCATTCACAATTTCTATGTTGCTTTGGCAT TAAATGTTGAGTCCTCACTTATGTGGTATTCACTCTTTTGCCCAAGTGTACGAACAAGTTTCTTGATTTGA
AA sequence Show only first row Show all	>Lus10021724 pacid=23154305 polypeptide=Lus10021724 locus=Lus10021724.g ID=Lus10021724.BGIv1.0 annot-version=v1.0 MPPFSSTSKPLRSLIATTARSRHFIRPAKHDQIRCTRTVARVSAPLSNTGIDCSRYFNSTLLGSSYSGSSAVQRRGFLGCGDGEEGGVLSKVYEERRVLG YSPEQLFDVVAAVDFYHGFVPWCQRSDILKRYPDGSFDAELEIGFKFLVESYVSHVELERPKMLKTTASQSGLFDHLINIWEFNPGPVPGSCDLYFLVDF KFQSPLYRQVCHTVVFKLLKHGRLIHNFYVALALNVESSLMWYSLFCPSVRTSFLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17650			Polyketide cyclase / dehydrase...		Lus10021724 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	15.2	0.9532
					Lus10040445 [exp]	22.8	0.9514
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	27.4	0.9510
					Lus10003173 [exp]	30.1	0.9507
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	31.9	0.9510
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	37.9	0.9508
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	44.0	0.9502
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	44.7	0.9504
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	47.9	0.9495
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	48.0	0.9502

Compare expression of checked genes

Lus10021724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.