Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 605 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT4G19230 523 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 517 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 496 / 5e-174 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 257 / 1e-80 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G05160 241 / 3e-74 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 240 / 5e-74 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G38970 235 / 3e-72 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G19630 234 / 9e-72 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G30180 231 / 9e-71 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042652 [exp] 829 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 562 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 524 / 0 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 502 / 2e-176 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 496 / 7e-174 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 488 / 3e-171 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10016515 [exp] 430 / 8e-148 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 342 / 2e-106 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 317 / 4e-105 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029100 [exp] 679 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 678 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 623 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 613 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 518 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 501 / 5e-176 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 497 / 3e-174 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G069600 [exp] 265 / 1e-83 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.008G067500 [exp] 260 / 5e-82 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 258 / 3e-81 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021725 pacid=23154342 polypeptide=Lus10021725 locus=Lus10021725.g ID=Lus10021725.BGIv1.0 annot-version=v1.0 ATGATCAACAAAATCAGAAAACCTCAGCTCCTCCCTCCTGGCTCCATGGGGTGGCCTGTGGTGGGCGAGACTCTGCAGCTATACTCACAGGATCCATCCA TTTTCTTCTCATCCAAACAGAAAAGATATGGAGAAATATTCAAGACCCACATCCTAGGTTGCCCTTGCATCATGCTTGCTAGCCCTGAAGCTGCTCGCTT CGTTCTTGTCACTCAAGCTCACCTCTTTAAGCCCACCTACCCTAAATCCAAAGAGCAACTCATTGGCCCCAAAGCCCTCTTCTTCCACATGGGAGGTTAT CATCTTCGCCTCCGCAAGCTCGTCCAGTCAGCTCTTTCTCTCCACCGACTCCGCAACTTGGTCGCAGATGTCTCCTCCCTCACCCTCTCCGCCTTGGATT CTTGGCACGGCGGCCAGGTCGTTACCACATATGAACAACTCAAAATGTTGTCGTTCGAAGTTGGAATCCTGGCGATTTTCGGACACCTGGAAGAGCATTA CAGGACAGAGTTGAAAATGAACTATGGCATCGTTGAAAAAGGCTACAATTCTTTTCCCACCTCTATTCCTGCATCTCCTTACAAAAGGGCTATTACGGCG AGGAGGAAGCTAAATGAGATATTAGGGGACATAATTAGCGAGAGGAAGGAGAAGAAGTTACTAGAGAAGGACTTGTTGGGCTGTTTACTAAGCTCCAAGG ACCAAAAGGGAGAGGTGTTGACCGACGACCAAGTTGCCGACAACATCATCGGAGTTCTGTTCGCTGCTCAGGACACGACGGCCAGTGCCATGACGTGGAT TATCAAGTACCTCCACGACAACCCCAAACTTCTCGAGGCCGTCAAGGCTGAACAGAAGGCAATTCAAGAATTGAATGAAAGAGACACGACGGTGACTTGG AGTCAAACTCGTACAAATATGCATTTCACTCACAAGGTTGTGTTAGAGAGCCTGAGGATGGCAAGCATTATAGCTTTCACTTTTAGAGAAGCAGTCACTG ACGTCAAATACAAAGGGTACCTTATTCCAAAAGGTTGGAAGGTGATGCCCTTGTTCAGGAACATTCATCACAATCCAGAATATTTCAGTGATCCTCATAA ATTTGAACCTTCAAGATTTGAGGTTGCAGCAAAGGCGAACACATTTATGCCATTTGGAAATGGGGTGCATGCTTGTCCAGGAAATGAGCTTGCCAAGCTG GAGATGCTCATCTTCATCCACCATCTGGTCACCAAGTACAGGTGGGAAGTGGTGGGAGATGAAAGTGGGACACAGAACTGCCCATTTCCAGTGCCAATGA ATGGACTCCCAGCTAGATTTTGGAAACAACAACACTAA
AA sequence Show only first row Show all	>Lus10021725 pacid=23154342 polypeptide=Lus10021725 locus=Lus10021725.g ID=Lus10021725.BGIv1.0 annot-version=v1.0 MINKIRKPQLLPPGSMGWPVVGETLQLYSQDPSIFFSSKQKRYGEIFKTHILGCPCIMLASPEAARFVLVTQAHLFKPTYPKSKEQLIGPKALFFHMGGY HLRLRKLVQSALSLHRLRNLVADVSSLTLSALDSWHGGQVVTTYEQLKMLSFEVGILAIFGHLEEHYRTELKMNYGIVEKGYNSFPTSIPASPYKRAITA RRKLNEILGDIISERKEKKLLEKDLLGCLLSSKDQKGEVLTDDQVADNIIGVLFAAQDTTASAMTWIIKYLHDNPKLLEAVKAEQKAIQELNERDTTVTW SQTRTNMHFTHKVVLESLRMASIIAFTFREAVTDVKYKGYLIPKGWKVMPLFRNIHHNPEYFSDPHKFEPSRFEVAAKANTFMPFGNGVHACPGNELAKL EMLIFIHHLVTKYRWEVVGDESGTQNCPFPVPMNGLPARFWKQQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	2.2	0.9506
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	3.5	0.9266
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	4.2	0.8962
					Lus10003411 [exp]	4.9	0.9103
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10003819 [exp]	4.9	0.8827
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	5.5	0.8928
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	6.7	0.9252
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	7.2	0.9193
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	8.4	0.9127
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	11.0	0.8963

Compare expression of checked genes

Lus10021725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.