Plant FIBer expression Database

Lus10021727 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42890 186 / 4e-62 ATSCP2 sterol carrier protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042654
[exp]
242 / 4e-83 AT5G42890 186 / 8e-61 sterol carrier protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G126200
[exp]
187 / 6e-63 AT5G42890 181 / 3e-60 sterol carrier protein 2 (.1)
Potri.014G029300
[exp]
181 / 4e-60 AT5G42890 169 / 9e-56 sterol carrier protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0311 SCP2 PF02036 SCP2 SCP-2 sterol transfer family
Representative CDS sequence
>Lus10021727 pacid=23154318 polypeptide=Lus10021727 locus=Lus10021727.g ID=Lus10021727.BGIv1.0 annot-version=v1.0
ATGGCTGCCACTGACCTCAAGTCCCTCTACATCATTGACCAACTCAAAGGATTCCTCGAGACTGACGAAGGCCAGGAGATCAAGAAGAAGATCAATCTCG
TCTATCAGTTCAACATCGCCCCCAAGAAAATTGGGTTCGAAGAGGTGATTTACACTATTGATCTCAAGAAAGGAGAGGTCACTCAAGGTCCATATGAAGG
AGGGAAAGCTGATGCTGTATTTTCAATCAAGGATGATGATTTTGTGAAGCTTGCATTGGGGAAGATGAACCCTCAGATTGCTTTCATGAGGGGAGCTCTG
AAGATCAAGGGCAGCTTGAGTGCAGCTCAGAAGTTCACTCCCGACATCTTCCCAAAGCCTGCCAAGATGTGA
AA sequence
>Lus10021727 pacid=23154318 polypeptide=Lus10021727 locus=Lus10021727.g ID=Lus10021727.BGIv1.0 annot-version=v1.0
MAATDLKSLYIIDQLKGFLETDEGQEIKKKINLVYQFNIAPKKIGFEEVIYTIDLKKGEVTQGPYEGGKADAVFSIKDDDFVKLALGKMNPQIAFMRGAL
KIKGSLSAAQKFTPDIFPKPAKM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42890 ATSCP2 sterol carrier protein 2 (.1) Lus10021727
[exp]
0 1
AT2G25737 Sulfite exporter TauE/SafE fam... Lus10011682
[exp]
4.2 0.9015
AT4G33520 AtHMAC6, HMA6, ... Arabidopsis thaliana heavy met... Lus10003403
[exp]
4.4 0.8581
AT1G62940 ACOS5 acyl-CoA synthetase 5 (.1) Lus10025842
[exp]
4.7 0.9078
AT1G01630 Sec14p-like phosphatidylinosit... Lus10004684
[exp]
9.7 0.8957
Lus10002266
[exp]
11.0 0.9003
AT4G09890 Protein of unknown function (D... Lus10005802
[exp]
13.0 0.8432
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Lus10014411
[exp]
13.6 0.8972
AT5G55490 GEX1, ATGEX1 gamete expressed protein 1 (.1... Lus10042450
[exp]
14.6 0.7325
AT2G48150 ATGPX4 glutathione peroxidase 4 (.1) Lus10042692
[exp]
14.8 0.8815
AT5G67360 ARA12 Subtilase family protein (.1) Lus10029575
[exp]
15.5 0.8934

Lus10021727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.