Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25000 563 / 0 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT1G69830 342 / 2e-109 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 328 / 3e-109 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042655 [exp] 839 / 0 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10036717 [exp] 367 / 1e-118 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 363 / 5e-117 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 355 / 3e-114 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 337 / 2e-112 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10030793 [exp] 355 / 6e-112 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029400 [exp] 651 / 0 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 649 / 0 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.017G093200 [exp] 361 / 8e-116 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.010G092900 [exp] 348 / 2e-111 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 333 / 8e-111 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10021728 pacid=23154321 polypeptide=Lus10021728 locus=Lus10021728.g ID=Lus10021728.BGIv1.0 annot-version=v1.0 ATGAACAAGCTTGCAACTACCTGGCTCTGTTTCTTCTCCATCTTCCTCTGCTTCTCCCCTTCGCAGTCCACTCCTGCCATCCTATTTCAGGGATTCAATT GGGAGTCAAGTAGCAAGTCAGGAGGATGGTATAACTCACTCCAGAATACAACTTCTGACCTCGCCGCCGCCGGAGTTACCCATGTCTGGCTTCCTCCGCC GTCTCAGTCAGCTGCCCAGCAAGGATACCTTCCAGGAAGGCTGTACGATTTGAACGCGTCGAGCTACGGAAACCAATCCGAATTACAATCCCTAATTTCA AACCTGAATCAGAAAGGAATCAAAGCCATCGCAGATATCGTCATCAATCATAGGACAGCCGAGAGGAAAGACGACAGAGGGATATGGGCAATTTTCGAAG GCGGCACCCCGGACGATCGCCTCGATTACGGCCCATCCTACATCTGTAAGGACGACACCGAGTATTCCAACGGACAGGGGAATCTCGATTCCGGTGCAGG CTTCGCTGCTGCCCCGGATATGGACCATCTAAACCCTAGACTCCAGTCCGAGCTCTCCGATTGGATGAACTGGCTCAAAACGGACATCGGATTCCACGGC TGGAGATTCGATATGGTGAAGGGTTACGCTGCAGGTGTGTCCAAGTTATATATGGAGCGGACGACGCCGGAGTTCGCGGTGGGGGAGAAGTGGGAATCGC TTGCTTACGGTCCAGACGGAAAGCCTGATGTGAACCAGGATGCTCACCGTTGGGATTTGAAGGATTGGGTTGAGGGTGCAGGTGGAGTAGTGAAGGCATT CGATTTCACAACGAAAGGGATTCTTCAGGCTGCTGTGGAAGGGGAGCTGTGGAGGTTGAAGGACTCGAATGGAAACCCACCAGGGTTAATTGGGTTGATG CCTGATAACGCAGTAACGTTTGTAGATAATCACGATACTGGTTCCACTCAAAATCTTTGGCCGTTCCCGTCGGATAAAGTTATGCTAGGATACGCATACA TCCTTACACATCCTGGAACTCCCACCATCTTCTACGATCACATGTTCGAATGGGGGATGAAGGAGCCGATCACAAAGTTAGCAGCTGTGAGGAATGCTTA CGGGATTACGTCCAACAGCATCGTCAACATCTTAGCTGCTGAATCCGACCTATATGTTGCTGCCATTAATGATGATGTTATTATGAAAATCGGACCCAAA ATGGACTTAGGGAATCTCATTCCTGCCAATTTTGAGCCTGTTACGTGGGGTGATAGTTTCTGTGTTTGGATCAGGAAGTAA
AA sequence Show only first row Show all	>Lus10021728 pacid=23154321 polypeptide=Lus10021728 locus=Lus10021728.g ID=Lus10021728.BGIv1.0 annot-version=v1.0 MNKLATTWLCFFSIFLCFSPSQSTPAILFQGFNWESSSKSGGWYNSLQNTTSDLAAAGVTHVWLPPPSQSAAQQGYLPGRLYDLNASSYGNQSELQSLIS NLNQKGIKAIADIVINHRTAERKDDRGIWAIFEGGTPDDRLDYGPSYICKDDTEYSNGQGNLDSGAGFAAAPDMDHLNPRLQSELSDWMNWLKTDIGFHG WRFDMVKGYAAGVSKLYMERTTPEFAVGEKWESLAYGPDGKPDVNQDAHRWDLKDWVEGAGGVVKAFDFTTKGILQAAVEGELWRLKDSNGNPPGLIGLM PDNAVTFVDNHDTGSTQNLWPFPSDKVMLGYAYILTHPGTPTIFYDHMFEWGMKEPITKLAAVRNAYGITSNSIVNILAAESDLYVAAINDDVIMKIGPK MDLGNLIPANFEPVTWGDSFCVWIRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10021728 [exp]	0	1
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10007450 [exp]	11.8	0.8895
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	16.2	0.8858
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	18.1	0.8924
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	19.6	0.8915
AT1G62760			Plant invertase/pectin methyle...		Lus10024595 [exp]	23.6	0.8294
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	40.2	0.8458
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025534 [exp]	40.9	0.8263
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	42.5	0.8891
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	47.7	0.8863
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	48.7	0.8852

Compare expression of checked genes

Lus10021728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.