Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33400 848 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT3G19240 770 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042656 [exp] 1171 / 0 AT4G33400 903 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10019860 [exp] 796 / 0 AT3G19240 908 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10014053 [exp] 791 / 0 AT3G19240 900 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029600 [exp] 988 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.002G126500 [exp] 986 / 0 AT4G33400 914 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.009G102000 [exp] 816 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.004G141300 [exp] 805 / 0 AT3G19240 893 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08553 [flax] [poplar] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Lus10021729 pacid=23154299 polypeptide=Lus10021729 locus=Lus10021729.g ID=Lus10021729.BGIv1.0 annot-version=v1.0 ATGGGAGCCGCTAATAGCCGCGAGAACCTGGAGCTATCGGACTCAGAGTCGGAGTATGAGGAAGACAGCGAAGAAGCTGGAGAAGATGCGAATTACAATG ACGCTACCGACGAGACACCGGAAAAGTCTTCTTCCTCTACGCGGCACCCGAAAACTCCGGCGTCTCTGGACGATGTGGAAGCTCGACTGAAAGCATTGAA GCTCAAATACCCTACCGCAACGACGAATCGGAAGGGGAAAAACCCCAATTTACAGAATGAAGTGAAGCTTTACCTTCATCTCGGCGGTAACACTCCCAAG GCAAAATGGGTCGTTTCTGAGAAGCTCACCTCTTACTCGTTTCTGAAGACCACGAAGGTGGGTGTCCATGGCGGAGAAAATGAGGAAGACGAAGATTCGG AATCAGAAACTGATGGCGAAGGTTGGTGGGTTTTGAAGGTGAGTAATAAAGTTAGAGTCAAAGTTGATGCAGAGATGCAAGTGAAGACTTTCAAGGACCA GCGACGTGTTGACTTTGTGGATCAGGGTGTGTGGGCGATTAAGTTCTTTAGCGATGAGGATTATCTGGTGTTTGTTAGCAAGTACAGGGACTGCGTATTT GAGAATACTTACGGGTATGAGGCAAATGATGCGAATCAAATGAAGGTTTACGGAAAGGAATTCATTGGGTGGGCTAACCCCGAGAAGGCTGACGATTCAA TGTGGGAAGATGCAGAAGACAGTTTCTCGAGAAGCCCCCAGCTAGTCACTCCTGTGAGGACAAATCAGGATTTGACAGAAGAATTTGAGGAGGTGGCCAA TGATGGGATACAGAGCTTAGCATTGGGTGCACTGGATAACAGCTTTCTGGTGGGAGATTCAGGTATCCAAGTCGTCAAGAACTTTAGTCATGGTATTCAA GGGAAAGGTGTTTATGTTAAATTTGGCAAAGAGCAAAAGGCTGCTTCAAGTTTGGTTGACTCCACTCCTAAGAAGGCCCTTCTTATGCGAGCTGAGACAA ATATGTTGCTCATGAGTCCATTAAATGATGCTAAACCACATGCCAGGGGTCTGCATCAGTTTGATATCGAGACTGGAAAAGTAGTTACCGAGTGGAAGTT TGAGAAGGATGGAACTGATATAACCATGAGGGATATTGTGAACGACAGCAAGGGTGCTCAGTTGGACCCATCTGGGTCAACATTTCTGGGATTGGATGAT AATCGTCTTTGCAGGTGGGATATGCGTGATCGCCATGGGATCGTTCAAGATCTTGTCACTTCCAGTGCCCCTGTACTTAACTGGGCTCAAGGCCATCAGT TCTCAAGGGGGACTAACTTTAGATGCTTTGCAAGCACTGGGGATGGATCAATTGTTGTGGGCTCCCTTGATGGAAAGATTCGCTTGTATTCCAGCAGTTC TATGAGGCAGGCTAAAACAGCTTTCCCTGGCCTAGGATCTCCTATTACTCACGTTGATGTTACCTTCGATGGAAAATGGATATTGGGGACAACTGATACT TATCTGATCCTCATCTGTACTTTGTTCACGGACAAGGATGGCAAGACAAAAACTGGTTTCGGTGGTCGTATGGGAAACAGAATTGCAGCTCCACGACTGC TGAAGCTGAATCCTTTGGATTCACATTTAGCTGGGGTTAATAACAAATTTCGCAATGCTCAGTTTTCATGGGTGACGGAGGATGGGAGACAGGAGAGGCA TTTGGTTGCAACGGTTGGAAAGTTCAGTGTGATATGGAACTTCCAACAGGTGAAGAATGGGAGCCATGAATGCTATAGGAACCAGGAAGGCCTAAAAAGC TGCTATTGTTACAAGATAGTGCTAAAGGATGACTCTATTGTGGATAGTCGCTTCATGCATGACAAGTTTGCTGTGACAGACTCTCCAGAGGCTCCCCTTG TGATTGCAACGAACATGAAAGTCAGCTCTTTCTCTGTATCCAGAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10021729 pacid=23154299 polypeptide=Lus10021729 locus=Lus10021729.g ID=Lus10021729.BGIv1.0 annot-version=v1.0 MGAANSRENLELSDSESEYEEDSEEAGEDANYNDATDETPEKSSSSTRHPKTPASLDDVEARLKALKLKYPTATTNRKGKNPNLQNEVKLYLHLGGNTPK AKWVVSEKLTSYSFLKTTKVGVHGGENEEDEDSESETDGEGWWVLKVSNKVRVKVDAEMQVKTFKDQRRVDFVDQGVWAIKFFSDEDYLVFVSKYRDCVF ENTYGYEANDANQMKVYGKEFIGWANPEKADDSMWEDAEDSFSRSPQLVTPVRTNQDLTEEFEEVANDGIQSLALGALDNSFLVGDSGIQVVKNFSHGIQ GKGVYVKFGKEQKAASSLVDSTPKKALLMRAETNMLLMSPLNDAKPHARGLHQFDIETGKVVTEWKFEKDGTDITMRDIVNDSKGAQLDPSGSTFLGLDD NRLCRWDMRDRHGIVQDLVTSSAPVLNWAQGHQFSRGTNFRCFASTGDGSIVVGSLDGKIRLYSSSSMRQAKTAFPGLGSPITHVDVTFDGKWILGTTDT YLILICTLFTDKDGKTKTGFGGRMGNRIAAPRLLKLNPLDSHLAGVNNKFRNAQFSWVTEDGRQERHLVATVGKFSVIWNFQQVKNGSHECYRNQEGLKS CYCYKIVLKDDSIVDSRFMHDKFAVTDSPEAPLVIATNMKVSSFSVSRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	1.7	0.9765
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	3.2	0.9665
					Lus10037590 [exp]	3.5	0.9764
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	3.5	0.9703
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	4.7	0.9606
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	4.9	0.9660
AT1G65710			unknown protein		Lus10010952 [exp]	4.9	0.9673
AT5G37010			unknown protein		Lus10020782 [exp]	5.2	0.9500
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	6.0	0.9608
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	7.0	0.9660

Compare expression of checked genes

Lus10021729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.