Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45474 283 / 2e-96 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT3G47470 159 / 4e-48 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 149 / 7e-44 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G19150 132 / 3e-37 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT1G61520 117 / 2e-31 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT1G29930 101 / 2e-25 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29910 101 / 2e-25 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29920 101 / 2e-25 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT3G54890 100 / 2e-25 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT4G10340 101 / 3e-25 LHCB5 light harvesting complex of photosystem II 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042657 [exp] 400 / 2e-142 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10001644 [exp] 162 / 4e-49 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021663 [exp] 162 / 6e-49 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10006416 [exp] 155 / 5e-46 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10011361 [exp] 155 / 7e-46 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 128 / 1e-35 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10012297 [exp] 113 / 9e-30 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 113 / 9e-30 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10015235 [exp] 108 / 8e-28 AT1G76570 445 / 9e-159 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029700 [exp] 303 / 2e-104 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.015G062200 [exp] 160 / 3e-48 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.003G171500 [exp] 149 / 6e-44 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 148 / 2e-43 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.006G139600 [exp] 139 / 7e-40 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G172400 [exp] 114 / 2e-30 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.008G041000 [exp] 102 / 6e-26 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.019G063101 [exp] 102 / 2e-25 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.005G258600 [exp] 102 / 2e-25 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.005G239300 [exp] 100 / 5e-25 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10021730 pacid=23154309 polypeptide=Lus10021730 locus=Lus10021730.g ID=Lus10021730.BGIv1.0 annot-version=v1.0 ATGGCGGTTGCAACAGGGAGAGCTTTGCTTCTTCAGCCTTGCCCTTCTTCTTCCTCATGTTTCAGTTCGAGGAATGCCCACAAGCCATTCTTATGCATTG CTGAGCCAGTGAACCAGAGGCGTGGCTCACTGACTGCGGTGGTTCGCGCTCAGCAGCGACCCACCTGGCTCCCTGGTCTCGACCCTCCGCCTTATCTGGA TGGAAGTTTGCCAGGGGACTATGGATTCGACCCACTTGGGCTTGGAGAGGACCCGGAAAGCTTGAAGTGGTATGTACAGGCGGAGCTTGTTCATGCCAGG TTCTCCATGCTTGGAGTTGCTGGTATTCTTTTCACAGACTTGCTACGGGTGACTGGAATCAAGAATTTGCCAGTATGGTATGAGGCAGGTGCCGTGAAGT TTGAATTTGCAAGCACAGGGACACTATTGTTTGTCCAACTTCTGTTAATGGGGTATGTTGAGACAAGGAGGTACATGGACTATATCAGTCCGGGATCTCA GGCCGAAGACGGCTCCTTCTTCGGCCTGGAAGCTTCATTGGAAGGCTTAGAGCCTGGATACCCTGGAGGACCACTATTGAACCCACTCGGACTGGCAAAG GACATAAAGAAAGCTGATGGCTGGAAGCTCAAGGAGATCAAGAACGGGAGGCTAGCAATGGTGGCGATGCTGGGGTTCTTTGTGCAGGCAGCTGTGACTC ATAAGGGTCCAATCGATAACCTTGTGGAGCATCTCTCTAACCCATTTCATAAAACCATCATCCAGATCCTCTCTAACTGA
AA sequence Show only first row Show all	>Lus10021730 pacid=23154309 polypeptide=Lus10021730 locus=Lus10021730.g ID=Lus10021730.BGIv1.0 annot-version=v1.0 MAVATGRALLLQPCPSSSSCFSSRNAHKPFLCIAEPVNQRRGSLTAVVRAQQRPTWLPGLDPPPYLDGSLPGDYGFDPLGLGEDPESLKWYVQAELVHAR FSMLGVAGILFTDLLRVTGIKNLPVWYEAGAVKFEFASTGTLLFVQLLLMGYVETRRYMDYISPGSQAEDGSFFGLEASLEGLEPGYPGGPLLNPLGLAK DIKKADGWKLKEIKNGRLAMVAMLGFFVQAAVTHKGPIDNLVEHLSNPFHKTIIQILSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	0	1
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	2.2	0.9359
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	3.0	0.9234
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	3.5	0.9258
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	4.2	0.9317
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	4.9	0.9314
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	6.2	0.9329
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	7.7	0.9170
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	9.2	0.9155
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	11.8	0.9281
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	12.2	0.9224

Compare expression of checked genes

Lus10021730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.