Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33330 801 / 0 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G77130 498 / 4e-170 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 498 / 2e-169 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G54940 473 / 2e-161 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 471 / 3e-160 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT5G18480 111 / 1e-25 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 79 / 1e-15 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 76 / 2e-14 ATGOLS6 galactinol synthase 6 (.1) AT1G60450 75 / 2e-14 ATGOLS7 galactinol synthase 7 (.1) AT1G56600 75 / 2e-14 ATGOLS2 galactinol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042658 [exp] 1251 / 0 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10020890 [exp] 523 / 2e-179 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 508 / 3e-173 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 507 / 2e-172 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10031507 [exp] 449 / 1e-151 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 440 / 8e-148 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10033485 [exp] 399 / 5e-132 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 105 / 5e-24 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 97 / 1e-22 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029900 [exp] 961 / 0 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.007G107200 [exp] 498 / 1e-169 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 485 / 8e-166 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G061600 [exp] 487 / 9e-166 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 485 / 1e-164 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G033500 [exp] 464 / 1e-157 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 107 / 2e-24 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G042000 [exp] 85 / 8e-18 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.008G189400 [exp] 85 / 9e-18 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G150400 [exp] 82 / 1e-16 AT2G47180 519 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10021731 pacid=23154308 polypeptide=Lus10021731 locus=Lus10021731.g ID=Lus10021731.BGIv1.0 annot-version=v1.0 ATGATGGCGGAAGCAGTAGGGATGATGAATTTTCAAAAGACGATGATGAAGTTGGCCGCCGGCACCCCTTCAAAAGCTCTAATCATTCGCCTCAACTTGG CCTTCATTGCCCTCTTCTTCATCGCCTATACCGCCTTGTTCCTCCGACCATCCTCCTCCCTCTACTTTGAAAATGCCGGATCCCTCTTTCGATGCTCCCT CCGTAACTGCCCTCACAAGATGGAGGGTGGTGGGGTGAAGATGAAAGCAGTCTTAGAAGAGCCCCAACAATCAAACATTATGGACATGAAGTACTCCTCC GTCCCGAAAACAAAACAAAACGTGACAAAATTTGAGGTTCCTAGCTTCATGGCATCGATTGCAAAAGCGAGTAAGAGGTCGACATTGAAGATCGGGATGG TCAACATGGACGCCCAAGATGATGACGTCAGCGAGTGGGCGTCCATCGGGGAGGTCATCCCCATCCGGTTCGATAAGGTGTCGAGGGAGCTGTTCAAGTG GCAGGACTTGTTCCCTGAGTGGATCGACGAGGAAGAAGAGACCGACGTACCCACATGTCCCGAGGTCCCTATGCCGGACTACGGGGCCTATGGGAGCGTG GACGTGGTGGTGGTGAAGCTGCCATGCAGGTATCCGGAGAAAGGTTGGGCGAGGGACGTGCTGAGGCTACAAGTGCACTTGGTTGCGGCCAATGTGGCGG CGAGGAAAGGGAGGAGGGATTGGAATTGGAGGACCAAAGTGGTGTTCTGGAGCAAGTGCCGTCCGATGGTTGAGATTTTCCGGTGCGATGAGATGGTGAA GAGGGAAGGGGATTGGTGGTTCTACCAGCCGGAGATGACGAGGTTGGAACACAAGGTGTCCCTGCCGGTTGGTTCCTGTAAGCTGTCGCTGCCATTGTGG GCGCAAGGCATCGACGAAGTCTACGATCTGTCAAAGATTAAAACGGCAACGCAAACAGTGCACAAGGAAGCATACGCTACCGTTTTACACTCATCAGAGA CGTATGTGTGTGGAGCCATCGCACTAGCACAGAGCTTGATCCAAACAGGGACGAAGCGCGACCTAATCCTGCTCCTGGACGCCTCAATCTCTCAACCCAA ACGCGACGCCTTAGCTGCAGCCGGCTGGAAGCTCCGCCTCATCAAGCGGATCCGGAACCCTAGAGCCGAGAAATACTCCTACAACGAGTACAACTACAGC AAATTCCGCCTCTGGCAACTCACCGACTACGATAAGGTCATTTTCATCGACGCCGACATCATCGTACTCCGCAACCTCGATCTCTTATTCCACTTCCCCC AAATGTCGGCCATCGGCAACGACGTCTGGATCTTCAATTCCGGAATCATGGTCCTGGAACCTTCCAATTGCACTTTCAAGATCCTCATGGACAAGCGCAG CGAGATCGTCTCCTACAATGGCGGCGACCAAGGGTTCCTCAACGAGGTCTTCGTCTGGTGGCATCGCCTCCCTCGTAGGATCAATTATCTCAAGAATTTC TGGGCCAACACCACAAATGAGGCCACTGTGAAGAACGAGATGTTCGGGTCCGATCCCCCCAAGGTGTACTCGATCCACTACCTGGGGCTGAAGCCGTGGA ATTGCTACAGGGACTACGATTGCAATTGGAACATAGGGGACCAGCGGGTGTACGCCAGCGACGTAGCGCACGGGCGGTGGTGGAGATTTCACGACGCCAT GGACGAGAAGCTGCAGAGGTTTTGTGGGCTGTCGAAGCAGAGGAAGATTGAGTTAGATTGGGAGCGGCGGATGGCGAGGAAAGCTGAGTTTAGCGATGAG CATTGGAAGATTAATATTACTGATTCTAGACGGAAGCATTTGGTTTCCTAA
AA sequence Show only first row Show all	>Lus10021731 pacid=23154308 polypeptide=Lus10021731 locus=Lus10021731.g ID=Lus10021731.BGIv1.0 annot-version=v1.0 MMAEAVGMMNFQKTMMKLAAGTPSKALIIRLNLAFIALFFIAYTALFLRPSSSLYFENAGSLFRCSLRNCPHKMEGGGVKMKAVLEEPQQSNIMDMKYSS VPKTKQNVTKFEVPSFMASIAKASKRSTLKIGMVNMDAQDDDVSEWASIGEVIPIRFDKVSRELFKWQDLFPEWIDEEEETDVPTCPEVPMPDYGAYGSV DVVVVKLPCRYPEKGWARDVLRLQVHLVAANVAARKGRRDWNWRTKVVFWSKCRPMVEIFRCDEMVKREGDWWFYQPEMTRLEHKVSLPVGSCKLSLPLW AQGIDEVYDLSKIKTATQTVHKEAYATVLHSSETYVCGAIALAQSLIQTGTKRDLILLLDASISQPKRDALAAAGWKLRLIKRIRNPRAEKYSYNEYNYS KFRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSAIGNDVWIFNSGIMVLEPSNCTFKILMDKRSEIVSYNGGDQGFLNEVFVWWHRLPRRINYLKNF WANTTNEATVKNEMFGSDPPKVYSIHYLGLKPWNCYRDYDCNWNIGDQRVYASDVAHGRWWRFHDAMDEKLQRFCGLSKQRKIELDWERRMARKAEFSDE HWKINITDSRRKHLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	0	1
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	1.0	0.9823
AT2G37610			unknown protein		Lus10016559 [exp]	4.5	0.9587
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	4.9	0.9706
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	5.2	0.9709
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	5.3	0.9723
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	6.9	0.9603
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	7.0	0.9624
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10002812 [exp]	7.6	0.9346
AT1G76250			unknown protein		Lus10016006 [exp]	9.9	0.9427
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	10.0	0.9648

Compare expression of checked genes

Lus10021731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.