Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42870 432 / 8e-136 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2) AT3G09560 393 / 2e-121 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025284 [exp] 405 / 4e-126 AT3G09560 946 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10009064 [exp] 366 / 1e-111 AT3G09560 894 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031000 [exp] 454 / 1e-142 AT5G42870 468 / 1e-148 phosphatidic acid phosphohydrolase 2 (.1.2) Potri.016G081000 [exp] 405 / 6e-126 AT3G09560 870 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.006G214800 [exp] 405 / 6e-126 AT3G09560 845 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [flax] [poplar] Lipin_N lipin, N-terminal conserved region CL0137 [flax] [poplar] HAD PF08235 [flax] [poplar] LNS2 LNS2 (Lipin/Ned1/Smp2)
Representative CDS sequence Show only first row Show all	>Lus10021733 pacid=23154331 polypeptide=Lus10021733 locus=Lus10021733.g ID=Lus10021733.BGIv1.0 annot-version=v1.0 ATGTATGCCGTGGGGCGAATAGGAAGTTATATAACCAAGGGAGTATCCACGGTGTCTGGCCCATTCCATCCTTTTGGGGGAGCTGTAGACATAGTTGTAG TGGAGCAAGCAGATGGGAGTTTAAAGTCTTCACCTTGGTATGTCCGATTTGGGAAATTTCAAGGTGTTCTTAAGGCCAAAGAGAAAGTGGTAATCATCAA CGTTAATGGAGTCGATGCTAGTTTCAACATGTACCTTGATCAAAGAGGCGAGGCTTTCTTTATCCGAGATGAGGATGATGATGATGATGATGATGGAGGA AATGATTCTGGGTCACATCATCCTATATTTTGTGATGGTATGAATAGACATGGACAAAATGGTTGGAGGCAGAGGCACACCCATAGTCTAGATTTTGATC ATAGTTTTCCCAATTCAGGAGACTATGAGTTGGCAAGCAATGAGAAGTATATGCTTAGAGCTCGTTCAGGAGGACCAAGGATAATGGGGATTGTTTTTGG TAGAAGGACAGTCAAGGCAGATAATTATCAACAGGGTGTTGGCCATTCTAGAGTTAGCTCATTGGAGCGTGCTGAGATGGCAGCTGATCTTTTGGAAGTT AGATGGTCTACTACAGGTATTTCACCTCTCAAGACATCGAATGATAATGATAATAACATAGTGGATATTGTTAAGAGTCGCGACAATGACGAAAGGACCA ACCCATCTTTGTCAAATCTTGATACTTGTGGAAGTAGCTTGGCTAAAGAAACTACTAGCACGAGCAATGCAGGAACACACACAAGCTCTCAAAATGCCTT TAAGGAAGCGTTTGTAGATAAAGTTAGTGTAGATGCAAGAGGACAAGTTGTTGAAACTTTCACACAAGTTGTACTGGAAATGCCACAAAATGTCCATGAA TGTAGGATACGAAATGCCGACCTTGAAGGTAATGATGATGATATCATGTCCAATGGCATCAATCCCGACTCGATAGATTTAGAGTCATCAAAATCACTCC GTATGGACACAAAAAATAGTGAAGTTCAATCATTTACCATTTGTGAGGCATCTGAGAGCTCATTTGCAACTTTGAAGGGTTCAAATGAAGAAACACATGA AACTATGTGCATTTCAAATGGGGAGCCCGGTGAAGCAACTTTGCTCGTTGAGGCTGTGCAAATGGTGTCTGAGCAGCTACCTGAGGTAATAGAGATTTGT CATGGGGAGATGGTTAATGAAGAAACTGGAGAAACTAAGTCAGAGGCGGGCTGTGCCAAGACTTATCATGATGGTTGCTACGAGCAACAACTTTTGTCAC AATCTTTCTTGTGCAACCATGATAAAGTCCAATCTTCAACAAAGTTCTTTGATGAACCTGACCAGCTTGCTCAATGTTGCGTGAAAAAGAATTCTAGTGT TCCAGCCTCGGAGTGTTCTGAAGGGGAACAATTTCTCTTCAGTGATCTTGATGAACCAAGTTGCAGGGATATAGGAAATGGCTTAAGTGTCGAAGAACAT AGTAATTGTCAATCGTATTCAACTGTAGACCAGTTTACTAAAGAGAATCAAGTAATTGATAATGGGAACTCAACAGGAGCGTCCAGTCCCATTTGCATCT CTAGAGTTCATAATATCGATGATGTGGAAAGTGGTCACTTGGCTGGATCATTACCTAGTGCTTGGTCAGATGTTGAAAGCCGTGATGCTATGACACAACA TCCATTAAGCCATTCTCTGGAATCGAAATCCACACCTCATTGGAAAGGTAATGAGAATGATGGGTTGGGTTGTGTAGATGTGGATAAAAAAAAGGAAGGT TCTTTGCAAGAGGATCATCATCACAGAGATACAAATCCAGCCAGTACTGGAAATCTGTCTCAATCTTCTGTTGCTGCTACTACTAATGGAAGCTGGAAAT TTTGGCCATTTTCTTCTAAGAAGTCAAAACAGAGAAAGATCACCAACACTGATTCAGGACATTCTAATTCTCAAAATTCTTCAGACAGTAAGATTGATAA TGGAAAGGCAGATGATATTTCTGAGATTAAAATTAAAAATAGGAGTTCCGAGACTACATCAGATGATAAAATCAACGGTATGACTGAGAAAGAAAAGTTA GAGAATACTTCAAATCGTAAAACTGAGAGTGAGACTTCTCAGAAAGTACCCGATAAGGAAATTGGTAGTAAAACACCACAAGATGCTTCAGAGAGCAAAG TTGTCATGGGGAAGTCTGATGGTATTTTAGACCATGAAACTGACATTAAAATGGTTAAACCTGACGTTAGGAAAAACAAAATAAGGGCACTCAATCCAAC GTCCGAACAATTGGAATCATTAAATCTAAACGAGGGCACAAATGTGGTGACATTCACATTCTCAACATCAATGTTGGGGAAACAGAAGGTTGAGGCCAGA ATTTTTCTATGGAAATGGGATGATCGCATTGTAATCTCAGACGTTGATGGGACAATTACCAAATCTGATGTTCTTGGACAGTTTATGCCTATGGTTGGTA TGGATTGGTCACAAACGGGAGTTACACGATTGTTTTCTGCGATTAAGGACAATGGGTACAAACTACTTTTTCTTAGTGCCCGGTCGATTTCACAAGCTTA TACCACTAGACAATTTCTATTCAATCTTAAGCAGGATGGGATGGCATTACCAGACGGTCCTGTTGTTATATCGCCTGATGGACTCTTTCCTTCTTTATAT CGTGAAGTGATTAGGAGGGCACCTCATGAATTCAAGATTGGGTGTTTAGAGGACATCAAAGCATTGTTTCCTACAAATCACAGCCCATTTTATGCTGGGT TTGGAAACAGAGACACCGATGAGCTTAGCTATCTCAAAGTTGGAATTCCAAGGGGTAAAATCTTCATCATCAATCCAAAGGGTGAAGTTTCTGTTCACCG GCGGGTCGACACAAAATCTTACACTTCACTCCACGATCTTGTTGATGAAATGTTCCCGCATCCTGTAACAACTATGGAGCCGGAGGATTTCAACTCATGG AATTACTGGAGGTTGCCACCTCTTGGCATTAATACGTGA
AA sequence Show only first row Show all	>Lus10021733 pacid=23154331 polypeptide=Lus10021733 locus=Lus10021733.g ID=Lus10021733.BGIv1.0 annot-version=v1.0 MYAVGRIGSYITKGVSTVSGPFHPFGGAVDIVVVEQADGSLKSSPWYVRFGKFQGVLKAKEKVVIINVNGVDASFNMYLDQRGEAFFIRDEDDDDDDDGG NDSGSHHPIFCDGMNRHGQNGWRQRHTHSLDFDHSFPNSGDYELASNEKYMLRARSGGPRIMGIVFGRRTVKADNYQQGVGHSRVSSLERAEMAADLLEV RWSTTGISPLKTSNDNDNNIVDIVKSRDNDERTNPSLSNLDTCGSSLAKETTSTSNAGTHTSSQNAFKEAFVDKVSVDARGQVVETFTQVVLEMPQNVHE CRIRNADLEGNDDDIMSNGINPDSIDLESSKSLRMDTKNSEVQSFTICEASESSFATLKGSNEETHETMCISNGEPGEATLLVEAVQMVSEQLPEVIEIC HGEMVNEETGETKSEAGCAKTYHDGCYEQQLLSQSFLCNHDKVQSSTKFFDEPDQLAQCCVKKNSSVPASECSEGEQFLFSDLDEPSCRDIGNGLSVEEH SNCQSYSTVDQFTKENQVIDNGNSTGASSPICISRVHNIDDVESGHLAGSLPSAWSDVESRDAMTQHPLSHSLESKSTPHWKGNENDGLGCVDVDKKKEG SLQEDHHHRDTNPASTGNLSQSSVAATTNGSWKFWPFSSKKSKQRKITNTDSGHSNSQNSSDSKIDNGKADDISEIKIKNRSSETTSDDKINGMTEKEKL ENTSNRKTESETSQKVPDKEIGSKTPQDASESKVVMGKSDGILDHETDIKMVKPDVRKNKIRALNPTSEQLESLNLNEGTNVVTFTFSTSMLGKQKVEAR IFLWKWDDRIVISDVDGTITKSDVLGQFMPMVGMDWSQTGVTRLFSAIKDNGYKLLFLSARSISQAYTTRQFLFNLKQDGMALPDGPVVISPDGLFPSLY REVIRRAPHEFKIGCLEDIKALFPTNHSPFYAGFGNRDTDELSYLKVGIPRGKIFIINPKGEVSVHRRVDTKSYTSLHDLVDEMFPHPVTTMEPEDFNSW NYWRLPPLGINT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Lus10021733 [exp]	0	1
					Lus10003082 [exp]	1.0	1.0000
					Lus10029072 [exp]	2.6	1.0000
					Lus10003536 [exp]	8.0	1.0000
					Lus10011078 [exp]	9.5	1.0000
					Lus10011832 [exp]	10.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	12.6	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	14.9	1.0000
					Lus10008385 [exp]	15.0	0.9921
					Lus10021579 [exp]	16.2	1.0000
					Lus10034328 [exp]	17.0	0.9975

Compare expression of checked genes

Lus10021733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.