Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42750 100 / 7e-24 BKI1 BRI1 kinase inhibitor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031100 [exp] 216 / 2e-68 AT5G42750 80 / 8e-17 BRI1 kinase inhibitor 1 (.1) Potri.002G127100 [exp] 212 / 1e-66 AT5G42750 73 / 2e-14 BRI1 kinase inhibitor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021736 pacid=23154322 polypeptide=Lus10021736 locus=Lus10021736.g ID=Lus10021736.BGIv1.0 annot-version=v1.0 ATGGATACTCAACTGAATCCAAACAGCAGAGAAAAAGCTTTGCATCAAGAGACCACTAGGAAAAAAGACTTGCCAACAGCATCAACCCAACAAGCGCCTT CTTCATCAACAGTATCCTCTGCTTCACCCCCTTCAGCAACCTCATCCCCATCTCATGAATTCTCCTTCACAATCTCTCTTCATTCTTCCTCAGCAGTAGC AGCTCCACCAGTATCTCAGACTACCAAACCCACCACCACTCCAAATTCATCATCATTAGCTATTGATCTGTCTCCAGCAGATGACATTTTCTTCCATGGC CACTTGCTCCCTCTTCATCTCCTCTCCCACCTCCCTAGTACTGTATCTCCTCGTTCCTCTACCAACTCCATAGACAGCTTCACTCTCCCCATCAGGGATT TGCTCGAAGATCAAATACCTAGCCGAACAAGCACCTCCAGCAACATCAATCAGAAGAGCAATAGCACCAACAACATCAGAACCAGACCAATCAGCAGCAA TCACGATGAGGGAATTGACATGGAACCAAAAGTAAGAGCCAAGTCCAAATCTTTCTCTTTGTTCGGGTGGAGAAAGAGGTGTGAAGCTAGAGAGAGGGAA GTCAAGGAGAAGCAGAAGAAAAGGCTCAAGTTCGATGTTAGTCATTTAGTGAAGAGGTATGCAAGGATGGTAAGGCCACTGCTTTCCTTCAGAGGTAGGA AGGAGAATAATCCTCATTTCCAGAGACAACAACCTTATTCGTTTTCAGGGCATTTGAGTGTCAGAAATAACAAACATGAGCTGAGAGGAAGGAAGGGCGA ATTCTCTGCACCTGCATCAATGAGGACATCTCCATCAAACAGTGGCCTTCTTTGCACTATTCCTTCTCCTTCTAGCGACAGCACCATGGAGGAGTTGCAG GCTGCTATTCAAGCTGCAATTGCTCACTGCAAAAATTCCATTGCCGCCGAAGAGAAGATCAAATGTTAG
AA sequence Show only first row Show all	>Lus10021736 pacid=23154322 polypeptide=Lus10021736 locus=Lus10021736.g ID=Lus10021736.BGIv1.0 annot-version=v1.0 MDTQLNPNSREKALHQETTRKKDLPTASTQQAPSSSTVSSASPPSATSSPSHEFSFTISLHSSSAVAAPPVSQTTKPTTTPNSSSLAIDLSPADDIFFHG HLLPLHLLSHLPSTVSPRSSTNSIDSFTLPIRDLLEDQIPSRTSTSSNINQKSNSTNNIRTRPISSNHDEGIDMEPKVRAKSKSFSLFGWRKRCEARERE VKEKQKKRLKFDVSHLVKRYARMVRPLLSFRGRKENNPHFQRQQPYSFSGHLSVRNNKHELRGRKGEFSAPASMRTSPSNSGLLCTIPSPSSDSTMEELQ AAIQAAIAHCKNSIAAEEKIKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	4.2	0.9198
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	4.2	0.8945
AT5G14410			unknown protein		Lus10022295 [exp]	6.2	0.8666
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	6.2	0.9148
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	6.3	0.8964
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	8.0	0.8525
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	8.7	0.9148
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	9.9	0.8893
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	10.8	0.8734
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	11.8	0.8789

Compare expression of checked genes

Lus10021736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.