Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33360 515 / 0 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09490 85 / 2e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 80 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 74 / 1e-14 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 74 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 74 / 1e-14 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 74 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G47290 71 / 1e-13 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT1G09500 69 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G58490 69 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041863 [exp] 409 / 3e-143 AT4G33360 416 / 3e-146 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10010311 [exp] 80 / 3e-16 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 74 / 3e-14 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10019734 [exp] 72 / 3e-14 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016388 [exp] 74 / 4e-14 AT5G19440 309 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 71 / 7e-14 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030973 [exp] 71 / 1e-13 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10019732 [exp] 71 / 1e-13 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035369 [exp] 70 / 4e-13 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127500 [exp] 510 / 0 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127400 [exp] 490 / 1e-175 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G218400 [exp] 76 / 6e-15 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.004G030700 [exp] 75 / 6e-15 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 74 / 8e-15 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 74 / 1e-14 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G138400 [exp] 74 / 1e-14 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.001G093300 [exp] 71 / 1e-13 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.003G181400 [exp] 71 / 2e-13 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 70 / 3e-13 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10021740 pacid=23154336 polypeptide=Lus10021740 locus=Lus10021740.g ID=Lus10021740.BGIv1.0 annot-version=v1.0 ATGAAGGTAGTGGTCACCGGAGCCTCTGGATACCTCGGCGGCCGCCTCTGTCACGTCCTTCTGCAACGAGGCCACGCCGTACGGGCATTGGTCCGTCGCA CCAGCGACCTCTCCTCTCTCCCTTCTCCCGCCACAACTGGCGTTGACTTCGAGCTAGCCTACGGTGATGTAACTGACTATAGATCACTAATCGACGCCTT CGATAGCTGCAACATCGTTTTCCACGCTGCCGCTATCGTCGAGCCTTGGCTGCCGGATCCTTCAAAATTCTTCTCGATTAATGTGCAAGGATTGAAGAAT GTACTGCGAGCAGCCAGAGAAACTGAGACAGTCGAGAAGATCATATACACTTCGTCTTTCTTCGCTCTCGGCCCGACTGATGGTTCTATAGCGGATGAGA GCCAGCTCCATCACGAGAAATATTTCTGCTCGGAGTATGAAAGATCAAAAGTCGCTGCGGACAAGGTTGCATTGCAAGCTGTATCCGAAGGGGTGCCGAT AGTTATGGTATATCCCGGTGTTGTGTATGGCCCGGGAAAGCTCACTACGGGCAATGTCCTGGCTAAATTGCTTATTGAGCGATTCCAGGGGCGTTTACCA GGATACATAGGGTCTGGATATGACAGATACTCTTTCAGTCATGTTGATGATGTGGTTCAAGGTCATTTTGCAGCAATGGAGAAAGGCAAGCTAGGTGAAA GATATTTGCTTACAGGTGAAAATGCATCATTCAAGCAAGTATTTGATATGGCGGCAGTCATCACCGGAACAAGCAAGCCAAAGATAAACATTCCTTTGTG GGCGATTGAGGTTTATGGATGGTTGATGGTTCTGGTATCACGAATCACAGGAAAGCTTCCTCTCATCAGCCCCCCGACGGTTCGTGTGTTGAGACACCAA TGGGCATATTGTTGTGACAAGGCTAAACAAGATCTAGGTTACAATCCTAGAAGCCTCAAGGATGGATTACTGGAGGTGCTTCCCTGGTTGAAGAGCTTGG GAGTGATAGACTACTGA
AA sequence Show only first row Show all	>Lus10021740 pacid=23154336 polypeptide=Lus10021740 locus=Lus10021740.g ID=Lus10021740.BGIv1.0 annot-version=v1.0 MKVVVTGASGYLGGRLCHVLLQRGHAVRALVRRTSDLSSLPSPATTGVDFELAYGDVTDYRSLIDAFDSCNIVFHAAAIVEPWLPDPSKFFSINVQGLKN VLRAARETETVEKIIYTSSFFALGPTDGSIADESQLHHEKYFCSEYERSKVAADKVALQAVSEGVPIVMVYPGVVYGPGKLTTGNVLAKLLIERFQGRLP GYIGSGYDRYSFSHVDDVVQGHFAAMEKGKLGERYLLTGENASFKQVFDMAAVITGTSKPKINIPLWAIEVYGWLMVLVSRITGKLPLISPPTVRVLRHQ WAYCCDKAKQDLGYNPRSLKDGLLEVLPWLKSLGVIDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	0	1
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	2.4	0.7834
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	11.2	0.7379
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	25.5	0.7580
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	26.1	0.7614
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	29.0	0.7212
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	42.8	0.6772
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	43.8	0.7009
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	45.9	0.7317
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	53.8	0.7373
					Lus10034896 [exp]	73.1	0.6869

Compare expression of checked genes

Lus10021740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.