Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48700 270 / 3e-89 ATCXE13 carboxyesterase 13 (.1) AT1G47480 259 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 248 / 6e-81 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 240 / 9e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 238 / 1e-76 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 236 / 3e-76 ATCXE5 carboxyesterase 5 (.1) AT1G49650 229 / 8e-73 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 215 / 5e-68 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 165 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 142 / 1e-39 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014036 [exp] 293 / 3e-98 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 273 / 3e-90 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 272 / 3e-90 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 266 / 7e-88 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 260 / 3e-85 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 258 / 9e-85 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 259 / 6e-84 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 218 / 7e-68 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 198 / 6e-62 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032600 [exp] 392 / 5e-137 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 311 / 1e-104 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 302 / 7e-102 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 301 / 1e-101 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 300 / 7e-101 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 293 / 2e-98 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 289 / 8e-97 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 272 / 3e-90 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G105100 [exp] 270 / 1e-89 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 261 / 6e-86 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10021743 pacid=23154332 polypeptide=Lus10021743 locus=Lus10021743.g ID=Lus10021743.BGIv1.0 annot-version=v1.0 ATGGCGGATCCAAACCAACCACAAGTAGCCACCGAATTCCCTGGCATGATCAAAATCTACACCGACGGCACCATCGACCGCCTCCGTGACACCGACTTCT CCCCACCTTCTTCATCCCCCTCCTCCGGCGTCTCCTCCAAAGACGTCATCTTCCTCCCAGATTCCAACCTCTCCGCCCGCCTTTACCTCCCTCAATCCAA CCCGGACCACCGCAAGCTCCCACTCATCCTCTACTTCCACGGCGGAGGTTTCTGCATCTCATCCCCCTTCTGTGCCAAATACCACCGCTACGCCTCCCGT ATCGCCGCCGAATCCCAATCCGTCGTCGTTTCATTCGACTACAGAAAAGCCCCGGAACACCCCATTCCAGCAGCCTACGAAGACTCATGGGCCGGTCTCC TTTGGGCCGTTTCTCATCGGGCCGGAAACGGGCCCGACCCTTGGCTTAACGAGCACGTCGACTTCGGACGATTGTTTTTAGCCGGCGACAGCGCCGGCGG TAATATCGTCCACAACTTGGCGATGGCAGCTGGGAATCCGGAGTTTGGACTTGAAGTTGACATTCTGGGGGTTGCTTTGGTGCATCCGTACTTTTGGGGA TCAGAGCCCATTGGATCCGAGTCGATATACTATCTACCTGAAGCGAAGGCGGGGGCGAACAGGCTGTGGTCGTTTATATGCCCGTCGAACCCAGATAACG ACGATCCGCGGGTGAATCCGGTGGCGGAAGATGGGCCGGAGCTGGTGGGGCTGGGGTGCAGAAGGGTGCTGGTATGTGTGGCGGAGAAGGATGTGCTGAG AGATAGAGGGTGGAAGTATTACGAAGCGTTGGGGAGGAGTGGATGGATGGGAGTAGTTGAGATTACAGAGAGTGAAGGTGAAGGGCATGGGTTTCACTTG TACAATTTAGAGGGTGAAAATGCTGACACTTTGATCAAACGGCTCGCTGCTTTCTTCAACAGGGACATGCCTCCACTTTCTTATTAG
AA sequence Show only first row Show all	>Lus10021743 pacid=23154332 polypeptide=Lus10021743 locus=Lus10021743.g ID=Lus10021743.BGIv1.0 annot-version=v1.0 MADPNQPQVATEFPGMIKIYTDGTIDRLRDTDFSPPSSSPSSGVSSKDVIFLPDSNLSARLYLPQSNPDHRKLPLILYFHGGGFCISSPFCAKYHRYASR IAAESQSVVVSFDYRKAPEHPIPAAYEDSWAGLLWAVSHRAGNGPDPWLNEHVDFGRLFLAGDSAGGNIVHNLAMAAGNPEFGLEVDILGVALVHPYFWG SEPIGSESIYYLPEAKAGANRLWSFICPSNPDNDDPRVNPVAEDGPELVGLGCRRVLVCVAEKDVLRDRGWKYYEALGRSGWMGVVEITESEGEGHGFHL YNLEGENADTLIKRLAAFFNRDMPPLSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	2.2	0.9943
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	2.8	0.9937
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	3.0	0.9894
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	6.6	0.9920
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	6.9	0.9924
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	8.5	0.9905
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	11.8	0.9905
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	12.3	0.9904
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	13.2	0.9908
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	13.5	0.9871

Compare expression of checked genes

Lus10021743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.