Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 363 / 4e-126 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 259 / 3e-85 ATCXE13 carboxyesterase 13 (.1) AT2G03550 251 / 2e-82 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 242 / 1e-78 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 238 / 5e-76 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 226 / 3e-72 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 224 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 223 / 3e-71 ATCXE5 carboxyesterase 5 (.1) AT1G68620 146 / 2e-41 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 135 / 3e-37 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042662 [exp] 610 / 0 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 291 / 6e-98 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 276 / 1e-91 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 272 / 4e-90 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10012073 [exp] 271 / 8e-90 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 271 / 1e-89 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 261 / 3e-85 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 199 / 2e-62 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 191 / 1e-57 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032800 [exp] 446 / 8e-159 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 319 / 4e-108 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 301 / 1e-101 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 295 / 2e-99 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104400 [exp] 292 / 4e-98 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104100 [exp] 291 / 5e-98 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032600 [exp] 290 / 4e-97 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 289 / 6e-97 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 251 / 2e-82 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.004G142900 [exp] 243 / 6e-79 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10021745 pacid=23154297 polypeptide=Lus10021745 locus=Lus10021745.g ID=Lus10021745.BGIv1.0 annot-version=v1.0 ATGGATCCATCCAAACAAGTTGCTCGCGACATCTTCCCATTCCTCCGTGTCTACAAAGACGGTACCATCGAACGACTCGTCGGTACAGAGTCTCTGCCTC CGGGTCTCGACTCCGAAACCGACGTCATCTCCAAGGACATCGTAATCTTCCCCGAAACCGGCGTCTCCGGCAGAATCTACCGCCCTAATTCCCTCATCCA AAATAAGAAGCTCCCCCTCGTGATCTACTACCACGGCGGAGGATTCTTCGCCGCCTCCACGTCCTCCAAAGAGTACCATATCTCCCTCAACCGCCTCGTA GCCGAGTCCAGAGTGATTCTCGTCTCCGTCGATTACCGCCTCGCCCCCGAGAATCCGATTCCGACTCCTTACGACGACGCATTCGCCGCGCTGAGGTGGA TCGTCTCCGGTGAAGGTGAAAAGGAGGAGCCGTGGCTGAAGGATTACGCGGATTTCGAGAGAGTGTATTTGGCAGGGGACAGCTGCGGGGCGAACATGTT GCACCATTTCGCCATGAAGAAGCTGAAGTCGGATGAGTCGGGTCGGGCAGTGGTGATCCGGGGAGTGGCGATGGTCCATCCGTATTTTTGGGGGAAGGAC CCGATCGGGGCGGAAGTCGGGGACGGGTTCAGGAAATCGATGGTGGATGACTGGTGGATGTTTATCTGTACGTCGGAGAAAGGGTGCGACGACCCGTTAA TCAACCCGTTTGCGGACGGATCGGGGCAGCTGGAAGAGCTGGGTTGCAAGCGGATTGTGGTGATTGTGGCCGGTGACGATATATTGAAGGATAGAGGGAG AGTTTACTACGAGAAATTGGTGGGGTCAGGGTGGAAAGGGGCGGCGGAGTTTGTGGAGACGGAAGGGAAAGGCCATGTGTTCCATATCGTTGAACCTGAT TGTGAGGAAGCTAAAGGCCTTATCAAACGCCTTGCTTCTTTCTTTCTTTAA
AA sequence Show only first row Show all	>Lus10021745 pacid=23154297 polypeptide=Lus10021745 locus=Lus10021745.g ID=Lus10021745.BGIv1.0 annot-version=v1.0 MDPSKQVARDIFPFLRVYKDGTIERLVGTESLPPGLDSETDVISKDIVIFPETGVSGRIYRPNSLIQNKKLPLVIYYHGGGFFAASTSSKEYHISLNRLV AESRVILVSVDYRLAPENPIPTPYDDAFAALRWIVSGEGEKEEPWLKDYADFERVYLAGDSCGANMLHHFAMKKLKSDESGRAVVIRGVAMVHPYFWGKD PIGAEVGDGFRKSMVDDWWMFICTSEKGCDDPLINPFADGSGQLEELGCKRIVVIVAGDDILKDRGRVYYEKLVGSGWKGAAEFVETEGKGHVFHIVEPD CEEAKGLIKRLASFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	0	1
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	2.0	0.9408
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	5.7	0.9216
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	7.3	0.8794
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	8.8	0.9202
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10006451 [exp]	9.5	0.9092
AT2G47030		VGDH1	Plant invertase/pectin methyle...		Lus10011760 [exp]	10.2	0.8887
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	10.7	0.9080
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	12.3	0.8765
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	13.3	0.9053
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	14.6	0.9102

Compare expression of checked genes

Lus10021745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.