Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34310 943 / 0 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042665 [exp] 1500 / 0 AT4G34310 984 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042664 [exp] 421 / 1e-137 AT4G34310 266 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034100 [exp] 1052 / 0 AT4G34310 1291 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G128201 [exp] 584 / 0 AT4G34310 515 / 8e-174 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10021747 pacid=23154320 polypeptide=Lus10021747 locus=Lus10021747.g ID=Lus10021747.BGIv1.0 annot-version=v1.0 ATGCTCCGCCTATGCTTTGGAGCTCGACGATATTCCCGTCGCTTCCCTCCCCTTCGTTCCTTCTCCACCTCATCCTTTCCCCCGCCTCTACCTCCGCCGT CTTCTTCATCTAAGGTTCAACCCGATGCCTCCAATAGCTTGCAGTTCCCTCCCTACGCCGCCCTACCACCGATAATTCAGCGGGACAATGGCATCTTCTC TCCCAATTCCAGTTCTTCTTTCCGTCTTAAATCGGCTGTCGTTCTATCTGCCACGCTTGCTTCTGCGGCCATGGCTTCCTACGCTTTGTTCCATTCTGGC GATCACGCGGAGTCCAAGCCCGACCGGAACCCTAATCCACTCCACGATGCGGTGGAGGCCGCCATGCACAAATCGGATGAGTCCTTGAGGATGATTTTTC ATCGGTTTAAGCAAACCGGGGTTGCCGCCTCGGTTCTATGGCAGTCGTTGAGGTCGGTGTTGTCCTCTGCCAATCACGAGGTCATGGTCGGGTTCGCCTC ACGGGTGGCGTCGTTTCTGGCTGACATTTCCGCTGCCAACCCCGCTCGCAGGGAGGCGGTGGTTGACGCTGGTGGTGGCCGGGTGATAGATTGGTTGCTG GAGACCGTGTCCGGTAATGGCTCTGATGGTTCTGTGACGCAGGCAGAGGCAGCCAGGGCCCTTGCTTACTTGATTGCTGATCCTCATGTGTCCAGCGCGG TGCTTGCCAGGCCTAATGCTGTCCCCTACTTGCTCCGGTTCATATTTTCGTGTCAGCCAAAGAAAAAGGTCACTTCTTTGGACTTTGGCGCAATTCTGAA GCAGCATTCAAGGCGTAGTTCACTCGGTGTTTCTGATTCTTTGAAAGGTAGAAGCATGCTTGTAGCTGCCATCATGGATATAGTCACATCCAACTGCGAC AGTCTAGAGGAAATATCTTTTAGGCCGGCCTTGTCAGGAAATGCAGCATTGAGGGATATTGCTGCGGCTATTCAAGTCATCGAAGAAGGCGGCTTGCAAT TGGATAGGACTGGGGATAATGAGGATGATAAAGATGATGGTAGGGGGATTAAAGGTATTGGGATCAAGATTTTGGAAGGAACAACAGTTTTAGGGCTATC GAGGACTAATGGACTTGCAGAATTGGAGCATCCTGATTCTAGTCATGTGCAGCTAGCCCCTGAGAGATCTGTGAAATGGCATGCAAGTTTGGTGGCTCGG TTGCTTCTGGAGGACCAAAATCTTCCATTAAACGGTTCTATTTCTGACTGGAGCTCATCACTTCTCTCCACAATTGCTCATGCAAGTAAAAATGAAGACA TTCCATTGTGTCAGGTGGCTCTGTCTGCCTTTTTACTTTCGGTTGAAAGAAGTCCTGGGGCAAGAAAGAAAGTCGCAGAGAGGGGTCTTCCACTGATGAG AGATATTGTTAAGCAGACCAGAAAACACAAGCAAGTGCAAGAGTCATTGGCTAAGGTTTTGGAATTCTTCTCAACTGGAGAGGTGCATTTATCGTTTGAA GAAAGTCAAAGGTGGTCTGGCGTTATGCTGCCCTGGGTCTTTGGCAAATTGTCTTCTGATGCTATGAGAGCTTCAGCAACAAAATTCCTTTCTCGCATTC TTGAGGATCATGGACCATCTTCTATTCCAATTTCTCAAGGATGGCTAGCTGTTATGCTGAATGAAGCTCTTAATTCTAATAATGCTTCATCTGCAAAGCG AGGCTCTCAGCCTAAAAGTGGCAATGTTAAGACTCAAGTCGACCAGTCTAATGTTGTTATCGCTACACAAGCTGCCAATCAGTTAGCAGGTTCTGTTGTT AATCGAGCAGCGATTCAGCACGGATCCACAGAATCTGTTGATGCTTTTCCACTTTCAGACCTTCTTTCCCTGGAACCTTTTACTGGGCCACGGAAAAACT TGAAAAAGGATACGGTGCCTAAGCTTAATGTAGCGGATTCGGCAGAGGCAACTGTTAAGGGGATCAAAGCATTGACTGAATTGTGTTATAAGGATCATTC GTGTCAGGAAAAAATTGTAGATTTTGGGGTATTTTGCTTGCTGAGACGCTTTCTATTGTGTGATGATTACGAGAAGTTGGCTGCGATGGAAACTTATGAT GCTTCTAGAGCCCTTGAGACACAGCACCATGCTTCAAATGCTACTAATGAGGAGTCTAAGGCTAATGGTAATAGTTTGTCAAGTGTCCGAGTGCCACCTA CAGCTCACATGCGCAGACATGCAGCACGGCTGTTGACAGTCCTTTCACCCCTTCACGGCGTTCAAAAGGCTATTGTGGCAGATAAAGCTCTTTGTAAATG GCTTGAAGACTGTGCTGAAGGAAAGTTACCAGGTTGTGGTGATGCAAAAATGCAGAGCTACGCAAGAGCAATACTCTTGAATGTCTTCTGTAATTACCAT GCTGATATCGAGAGAGCAAGCAGAGGTCCTGAAACTGGAGCTACAAATAGAAAGCATGCATGTCCCCTGTATGATGATATGGTGTTTTTGGTTCGACCCG ATCTTGCCCATTGGAAGCGTTGTGAAAAGATGGGTTATGAGACGGTTCAGAGTGTTAAAACTTCAACAGAGGGATGTTCAGTTGACAACCAGAGTAAATC AGTACCACAGGGTCCAAAGGCTGGTGATCATTCTGATTCCAATCATGAATTTCATGATGATTTTGAAACTGAGGGTCCAGAAATTGATGTTATCTTTGTA CATGGTTTACGGGGTGGGCCGTTCAAGAGCTGGCGCATTTCTGAGGATAAAACGTCTACTAAATCTGGCTTGGTAGAGAAGATTGATGAGGAAGCAGGAA AACTTGGAACCTTTTGGCCTGGGGAGTGGCTTTCAGCTGATATGCCTCGAGCTAGATTATTTACACTCAAGTACAAGACAAATCTTACTCAGTGGTCTGG TGCTACCCTGCCGCTTCAGGAAGTCAGCTCCATGTTGTTAGAGAAACTTGTTGCTGCTGGGATCGGGAACCGGCCTGTCGTATTTGTGACTCACAGCATG GGAGGCCTTGTCGTCAAGCAGATATTGCATAAAGCAAAGACAGAAAATATAAATAACCTTGTGAACAACACAGTTGGAATCGTGTTCTATAGCTGTCCAC ATTTCGGAAGCAAGCTAGCAGATATGCCTTGGCGAATGGGTCTTGTATTACGCCCTGCTCCAAGTATAGGGGAGCTAAGAAGTGGGTCTCCGTGGTTGGT AGAGCTTAACGACTTCCTCAGGCAAAGGGAAAAGAAGAAATGGCTCCAAGTACTCAGCTTTTGTGAGACTAAAGTAACTCCTATAGTTGAAGGCTATGGT GGTTGGGCCTTTCGGGCAGAGATCGTGCCAATGGAATCTGCATATCCTGGATATGGGGAAGTTATTGTCTTGGAGTCGACTGACCATATAAATTCATGCA AACCCATGAGCCCCAGCGATCCTTCTTATACAGAGGTTTTAAAGTTCCTGAAGAAGCTCCAGTCTCGTTATCATTCCTGA
AA sequence Show only first row Show all	>Lus10021747 pacid=23154320 polypeptide=Lus10021747 locus=Lus10021747.g ID=Lus10021747.BGIv1.0 annot-version=v1.0 MLRLCFGARRYSRRFPPLRSFSTSSFPPPLPPPSSSSKVQPDASNSLQFPPYAALPPIIQRDNGIFSPNSSSSFRLKSAVVLSATLASAAMASYALFHSG DHAESKPDRNPNPLHDAVEAAMHKSDESLRMIFHRFKQTGVAASVLWQSLRSVLSSANHEVMVGFASRVASFLADISAANPARREAVVDAGGGRVIDWLL ETVSGNGSDGSVTQAEAARALAYLIADPHVSSAVLARPNAVPYLLRFIFSCQPKKKVTSLDFGAILKQHSRRSSLGVSDSLKGRSMLVAAIMDIVTSNCD SLEEISFRPALSGNAALRDIAAAIQVIEEGGLQLDRTGDNEDDKDDGRGIKGIGIKILEGTTVLGLSRTNGLAELEHPDSSHVQLAPERSVKWHASLVAR LLLEDQNLPLNGSISDWSSSLLSTIAHASKNEDIPLCQVALSAFLLSVERSPGARKKVAERGLPLMRDIVKQTRKHKQVQESLAKVLEFFSTGEVHLSFE ESQRWSGVMLPWVFGKLSSDAMRASATKFLSRILEDHGPSSIPISQGWLAVMLNEALNSNNASSAKRGSQPKSGNVKTQVDQSNVVIATQAANQLAGSVV NRAAIQHGSTESVDAFPLSDLLSLEPFTGPRKNLKKDTVPKLNVADSAEATVKGIKALTELCYKDHSCQEKIVDFGVFCLLRRFLLCDDYEKLAAMETYD ASRALETQHHASNATNEESKANGNSLSSVRVPPTAHMRRHAARLLTVLSPLHGVQKAIVADKALCKWLEDCAEGKLPGCGDAKMQSYARAILLNVFCNYH ADIERASRGPETGATNRKHACPLYDDMVFLVRPDLAHWKRCEKMGYETVQSVKTSTEGCSVDNQSKSVPQGPKAGDHSDSNHEFHDDFETEGPEIDVIFV HGLRGGPFKSWRISEDKTSTKSGLVEKIDEEAGKLGTFWPGEWLSADMPRARLFTLKYKTNLTQWSGATLPLQEVSSMLLEKLVAAGIGNRPVVFVTHSM GGLVVKQILHKAKTENINNLVNNTVGIVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPWLVELNDFLRQREKKKWLQVLSFCETKVTPIVEGYG GWAFRAEIVPMESAYPGYGEVIVLESTDHINSCKPMSPSDPSYTEVLKFLKKLQSRYHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	0	1
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	4.5	0.7292
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	5.5	0.7557
AT1G72390			unknown protein		Lus10008132 [exp]	7.1	0.7429
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	7.9	0.7691
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	9.2	0.7403
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	9.5	0.7403
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	16.7	0.6924
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	17.0	0.7371
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10008553 [exp]	17.5	0.7150
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	17.5	0.7555

Compare expression of checked genes

Lus10021747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.