Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26550 255 / 1e-83 HO2 heme oxygenase 2 (.1.2.3) AT2G26670 196 / 9e-61 GUN2, ATHO1, TED4, HY6, HY1 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) AT1G69720 181 / 5e-55 HO3 heme oxygenase 3 (.1.2) AT1G58300 169 / 4e-50 HO4 heme oxygenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042666 [exp] 455 / 1e-161 AT2G26550 263 / 1e-86 heme oxygenase 2 (.1.2.3) Lus10030092 [exp] 189 / 8e-58 AT2G26670 407 / 1e-144 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Lus10005718 [exp] 151 / 1e-43 AT2G26670 354 / 7e-124 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034200 [exp] 288 / 4e-96 AT2G26550 305 / 3e-103 heme oxygenase 2 (.1.2.3) Potri.006G069700 [exp] 187 / 4e-57 AT2G26670 363 / 3e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Potri.018G131700 [exp] 182 / 2e-55 AT2G26670 364 / 2e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [flax] [poplar] HO PF01126 [flax] [poplar] Heme_oxygenase Heme oxygenase
Representative CDS sequence Show only first row Show all	>Lus10021748 pacid=23154323 polypeptide=Lus10021748 locus=Lus10021748.g ID=Lus10021748.BGIv1.0 annot-version=v1.0 ATGCCGTCCTCATTCTCACTCACATCGCTGCACAATCCAGCTTCACTACAACCTCCATTCCATTCTCTACTCCAGCTTTCAACCTCTTCCACAGCCTGGA CATCCGTTTCCTTTCGAAATGCTGGAGGAAGTAGAGCCCCGCTTCCAATTCTCTGTTGCTCGAATTCCATGTCTTCATCTCCTCCCTCAGTTGCCGCCGC GTCTCCGGTCCCTCCTCCTGTTCTGAAAAAGAGAAAGCGGTACCGGAAATCTTACCCGGGTGAAAGCAATGGGATTACTGAAGAGATGAGGTTCGTCGCC ATGCGACTCCGCAACGTCAAGGGAATATATCCTCACAAGAAAAAGAAGGCCGTCTCGGAATCCGAATCTCAGGATTCCGACAGCGACGGCGACAGCGGAT GTGATGAATCAGAAGAAGAACAAGAAGTAGTATTACAACAAGAAGAAGTAGAAGAGAGAAAGCAGGTTGAGGAAGTGGGAAGTGAGGAGGGTGAATCAGA GACTTGGGTTCCTAGTATGGAAGGGTTTGTAAAGTATCTAGTTGCTAGCAAGCTGGTTTTCAGCACAGTGGAACGGATTCTGGATACATCCGATGACATT TCTTATACACACTTCAGGAAAAATGGATTGGAAAGGTCAAAGGCACTAGCAAATGACCTTCAATGGCTGGCTGTAAACTACGGAGTTGAAATTCCGGAGC CAAGTAATCAAGGGGTTGTTTATGCCAAGTATTTAGAGGAGATTGCTAAAAAGAGTGCACCTTTGTTCCTCTCCCATTTGTACAACATTTATTTCTCCCA CTTTGCAGGCGGTCGAGTCATAGTTAACCAGGTATGTGATGAGCTTTTAGAAGGGAAAGAACTGGAGTTCTTGCAGTGGGAAGGAGATGGCCAAGAATTG TTGAAGGATGTAAGAGACAAGCTCAAAACGCTTGGAGAGCACTGGTCAAGAGATGTAAAGAACAGATGCTTGAAAGAGACAGCAAAATGTTTCAAGTATA TGGGTCAGATAGTGAGGTTACTCATCTTATGA
AA sequence Show only first row Show all	>Lus10021748 pacid=23154323 polypeptide=Lus10021748 locus=Lus10021748.g ID=Lus10021748.BGIv1.0 annot-version=v1.0 MPSSFSLTSLHNPASLQPPFHSLLQLSTSSTAWTSVSFRNAGGSRAPLPILCCSNSMSSSPPSVAAASPVPPPVLKKRKRYRKSYPGESNGITEEMRFVA MRLRNVKGIYPHKKKKAVSESESQDSDSDGDSGCDESEEEQEVVLQQEEVEERKQVEEVGSEEGESETWVPSMEGFVKYLVASKLVFSTVERILDTSDDI SYTHFRKNGLERSKALANDLQWLAVNYGVEIPEPSNQGVVYAKYLEEIAKKSAPLFLSHLYNIYFSHFAGGRVIVNQVCDELLEGKELEFLQWEGDGQEL LKDVRDKLKTLGEHWSRDVKNRCLKETAKCFKYMGQIVRLLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	0	1
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	2.4	0.8000
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	7.5	0.7381
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	9.5	0.7759
AT1G27070			5'-AMP-activated protein kinas...		Lus10036706 [exp]	15.2	0.7582
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	16.3	0.8213
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	21.4	0.8168
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	22.3	0.7349
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	25.7	0.7713
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	28.9	0.7711
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	40.6	0.7734

Compare expression of checked genes

Lus10021748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.