Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11800 1447 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT4G23000 1436 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042668 [exp] 1147 / 0 AT4G11800 918 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034400 [exp] 1562 / 0 AT4G23000 1603 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10021750 pacid=23154328 polypeptide=Lus10021750 locus=Lus10021750.g ID=Lus10021750.BGIv1.0 annot-version=v1.0 ATGCAGCATTCTGGAGCCGGTCTCTTTGGTGGTGTTGGCGCTCACCAGAGTCTGGCTTCAGGATATCTGTTGTTAATAGTTGCAAGAGTGGCTGATGGGC AAGGACAAGCATTCTTTAGGTTTGTTGGATACCCTAAAAATGGAGAGGGAAAGACTATCAGACCCAGCTATTCAAATTTCAGCAGATGGTATATAGCTTG GATTTTAGTTGCTGCTCTGTATCATCTCCCTAGTTTTCAGTCAATGGGAGTAGATATGAGGATGAATTTGTCCTTGTTCATGACTATATATGTTTCTTCC ATTGTGTTTCTTCTTGTTTTTCACGTTATATTCCTTGGACTCTGGTCTCTTGGCCTTGTTTCTAGAGTTGCCGCAAAACAGCCAGAGTTAGTCACCATCT TCCAAAATTGTGCTGTTCTCAGTGTAGCCTGCTGCGTATTTTATAGCCACTGTGGAAATCAAGCTTTGATGAGAGATAGGCCTCTTCAGAGAAGGCACTC TAGTTGGTTTCCTTTTCGGAAGAAAGAAGAGATCAATACCTGGCTTGCCCAATTTATCCGCATGAATGAGTTAAAAGACCAGGTCTGCTCTTCTTGGTTT GCTCCTGTGGGATCTGCTAGTGATTATCCCCTTTTATCAAAGTGGGTCATTTACGGGGAGATAGGCTGCAGTGGAAATGAATGTTCAGCCACATCCGATG GTATCTCTCCTATATATTCATTGTGGGCCACATTTATTGGTCTTTATATCGCTAACTACGTGGTGGAAAGATCAACTGGGTGGGCTCTTACTCACCCTTT GTCAGTTAAAGAGTATGAGAATTTGAAGAAAAAGCAGCTGAAGCCAGACTTCTTGGATATGGTTCCTTGGTATTCAGGAACGTCTGCTGATTTGTTCAAG ACAGTGTTCGACCTTTTGGTATCAGTAACTGTATTTGTTGGTCGCTTTGACATGCGCATGATGCAGGCTGCAATGAACAAGGTCCAGGATGGAGTTAAAT CAGACCATTTCTATGATCATCTTAGCGAAGATGAAGATCTTTGGTTTGACTTCATGGCTGATACAGGGGACGGTGGGAACTCAACTTACAGTGTGGCACG ATTACTTGCTCAGCCATCTCTGAGGGTTAGCATAGGAGAATCTATGCGCTCTCTGCCACGAGCAAAGTTACTTCTTGTGGGAGGGGATCTTGCATATCCT AATCCATCATCATTCACATACGAAAGACGCTTCTTCTATCCCTTCGAATATGCACTGCAACCACCCTCTTGGTATAAAGAGGACCAAGTGGCAGCACACA AGCCCGAGTTACCCCATGGAGTGTCTGAACTGGAACAGTATGATGGACCTCAATGTTTTGCCATTCCTGGAAACCACGATTGGTTTGATGGGCTTAATAC TTTCATGAGGTACATATGTCATAAAAGCTGGCTCGGTGGGTGGCTTATGCCCCAAAAGAAGAGTTATTTTGCCTTGCAACTCCCAAAACGGTGGTGGGTC TTTGGTCTTGATCTAGCACTCCATAATGATATTGATGTGTTCCAGTTCAAATTCTTTACTGAAGTAGTAAAAGAGAAGGTGGGAGAAAATGACTCTGTGA TCATCATAACGCATGAACCAAATTGGCTTCTCGATTGGTATTGGAATGATGTCTCTGGGAAGAACGTCTCACACCTTATACATGACTATCTGAAAGGAAG GTGCAAGCTTCGGATGGCTGGGGATTTGCATCATTATATGCGTCATTCACATGTTCCTTCAGATGGACCAGTTGATGTGCAACATCTGATTGTAAATGGA TGCGGTGGTGCCTTTTTACACCCCACCCATGTCTTTGGTGACTTTAAGAAAGCTTACGGAACTACCTATGATACCAAGGCCTCATATCCGTCTTTAGAAG ACTCCAGCAAGATTGCTTTGGGAAATATTTTGAAGTTCCGTAAGAAAAATTGGCAGTTCGATTTCATTGGTGGCATTATATACTTTGTTCTGGGATTTTC AATGTTTCCTCAGTGTAACCTTGACCTCATTTTGCAAAGTGATACATTTTCCGGCCACATATGGAGTTTCTTTGGGACAGTTTGGAATGCTTTTGTGCAC ATGCTACAACACTCTTATGTGTCCTTATTTGGTGCGGTTGGGTTGTTGATTACGTCAGTTGCATTTCTCCCAGCAAAGATGTCTTGGAAGAAACGTGCTT TCATAGGATTTCTTCATTTCTCTGCACATCTGGTTTCGGCTTTGGTCCTAATGTTGCTCTTGGAATTGGGTGTTGAGACTTGCATTAGACATAATTTACT AGCTACATCAGGCATGCTTTCTTTACTTCTATCTACTAAAGCTGTGGAGAGCGAGCATTTTCCAGACCCTACTGGCCTTCGGGATAGGATAGAACAATGG ACGCTTGGGCTTTACCCTGCGTGCATTAAGTATCTCATGTCAGCTTTTGATGTTCCTGAGGTTATGGCTGTCACACGTAGTAATATCTGTAAGAACGGCA TGGAAACACTCTCGAGAGGAGGTGCCATCATTTATTATGCGTCGGTCTTCCTCTACTTCTGGGTCTTCTCAACACCAATAGTCTCCTTCGTGTTTGGAAG TTACTTGTACATATCTATTAACTGGCTTCGGATTCACTTTGATGAAGCCTTCTCCTCACTTCGTATTGCAAACTACAAGTCATTCACGAGATTCCACATT GACAGAGCCGGTGACCTGGAAATTTTCACTCTTGCCGTCGACAAGGTTCCGAAGGAGTGGCAATTGGATCCACATTGGGATGGTGAGCCAAGGATGCCTC AGCAGATGAACCACCACAGGAAGTACCCTAGCAAGTGGAGTGCAGCTACTTATCAGCAGGACCCCATCAATACAGTTAAGATAGTTGACCATTTCGTCAT TAGACAAACAGACGAGCCTGGTTTAGGATCAACCAACGGAGAATCAGTGTCTTGCTGA
AA sequence Show only first row Show all	>Lus10021750 pacid=23154328 polypeptide=Lus10021750 locus=Lus10021750.g ID=Lus10021750.BGIv1.0 annot-version=v1.0 MQHSGAGLFGGVGAHQSLASGYLLLIVARVADGQGQAFFRFVGYPKNGEGKTIRPSYSNFSRWYIAWILVAALYHLPSFQSMGVDMRMNLSLFMTIYVSS IVFLLVFHVIFLGLWSLGLVSRVAAKQPELVTIFQNCAVLSVACCVFYSHCGNQALMRDRPLQRRHSSWFPFRKKEEINTWLAQFIRMNELKDQVCSSWF APVGSASDYPLLSKWVIYGEIGCSGNECSATSDGISPIYSLWATFIGLYIANYVVERSTGWALTHPLSVKEYENLKKKQLKPDFLDMVPWYSGTSADLFK TVFDLLVSVTVFVGRFDMRMMQAAMNKVQDGVKSDHFYDHLSEDEDLWFDFMADTGDGGNSTYSVARLLAQPSLRVSIGESMRSLPRAKLLLVGGDLAYP NPSSFTYERRFFYPFEYALQPPSWYKEDQVAAHKPELPHGVSELEQYDGPQCFAIPGNHDWFDGLNTFMRYICHKSWLGGWLMPQKKSYFALQLPKRWWV FGLDLALHNDIDVFQFKFFTEVVKEKVGENDSVIIITHEPNWLLDWYWNDVSGKNVSHLIHDYLKGRCKLRMAGDLHHYMRHSHVPSDGPVDVQHLIVNG CGGAFLHPTHVFGDFKKAYGTTYDTKASYPSLEDSSKIALGNILKFRKKNWQFDFIGGIIYFVLGFSMFPQCNLDLILQSDTFSGHIWSFFGTVWNAFVH MLQHSYVSLFGAVGLLITSVAFLPAKMSWKKRAFIGFLHFSAHLVSALVLMLLLELGVETCIRHNLLATSGMLSLLLSTKAVESEHFPDPTGLRDRIEQW TLGLYPACIKYLMSAFDVPEVMAVTRSNICKNGMETLSRGGAIIYYASVFLYFWVFSTPIVSFVFGSYLYISINWLRIHFDEAFSSLRIANYKSFTRFHI DRAGDLEIFTLAVDKVPKEWQLDPHWDGEPRMPQQMNHHRKYPSKWSAATYQQDPINTVKIVDHFVIRQTDEPGLGSTNGESVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	0	1
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	3.7	0.8074
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	6.8	0.8186
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	9.2	0.7921
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	10.4	0.7861
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011737 [exp]	11.6	0.7744
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	11.7	0.7841
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	13.0	0.7878
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	13.2	0.7859
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	13.3	0.7955
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	14.5	0.7508

Compare expression of checked genes

Lus10021750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.