Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010039 [exp] 52 / 1e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019466 [exp] 47 / 8e-07 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021752 pacid=23154307 polypeptide=Lus10021752 locus=Lus10021752.g ID=Lus10021752.BGIv1.0 annot-version=v1.0 ATGACAAATCAACAAGTGATTGTCTTATGCTACATTTTTTCTAAAGGGTTTCCTGAAGAGGAAGTTCTATTTGATAACAGGCAACATATCCTTTGTCGAT CTAACTTGTACACCTTACTACCTGAGAAATGGCTAAATAGCAAGGTTATAACTGCAGCATCACACCGCACAACATATTTCACAAGAGTTAAAAATGAACG CGTAGTTTGGTACTTACCGGCAACGTTATCTAAAGATTTGATGACTAAGAGAACTCCCTATGAACAAGCTGTGAATGTGTACCGACATACAACTTTATTG CGCAATTCAAACAACTGTTGGAAGGTCAAATTCTTATACTTCATGTTTTATGAGATGGTGCTAGCAGATAATTCGTTAGTCGAAGTCCCAAGGATCATCG ACTTTGACATACTCTCTCCAGAGAATGTTTCAAAATAA
AA sequence Show only first row Show all	>Lus10021752 pacid=23154307 polypeptide=Lus10021752 locus=Lus10021752.g ID=Lus10021752.BGIv1.0 annot-version=v1.0 MTNQQVIVLCYIFSKGFPEEEVLFDNRQHILCRSNLYTLLPEKWLNSKVITAASHRTTYFTRVKNERVVWYLPATLSKDLMTKRTPYEQAVNVYRHTTLL RNSNNCWKVKFLYFMFYEMVLADNSLVEVPRIIDFDILSPENVSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021752 [exp]	0	1
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	6.2	0.8974
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	8.4	0.9035
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	8.9	0.8786
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	23.4	0.8916
AT5G12340			unknown protein		Lus10009698 [exp]	24.7	0.8536
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	25.8	0.8766
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	33.7	0.8542
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	34.4	0.8868
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	36.3	0.8873
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	49.2	0.8491

Compare expression of checked genes

Lus10021752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.