Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47500 461 / 5e-161 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 459 / 6e-160 ATRBP47C RNA-binding protein 47C (.1.2) AT3G19130 435 / 1e-150 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 417 / 2e-143 ATRBP47A RNA-binding protein 47A (.1) AT1G11650 352 / 2e-118 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 345 / 1e-115 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 340 / 1e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 337 / 6e-113 ATRBP45A RNA-binding protein 45A (.1) AT1G54080 144 / 2e-38 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 141 / 2e-37 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012070 [exp] 442 / 4e-154 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10012071 [exp] 424 / 8e-148 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 409 / 9e-142 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10027911 [exp] 397 / 1e-137 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10019889 [exp] 390 / 1e-134 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10031844 [exp] 373 / 2e-126 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 370 / 2e-125 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 352 / 1e-118 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 265 / 7e-84 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034600 [exp] 566 / 0 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 545 / 0 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G105300 [exp] 455 / 2e-158 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 452 / 3e-157 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 367 / 2e-124 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 361 / 4e-122 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 361 / 4e-122 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 359 / 5e-121 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 144 / 1e-38 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 142 / 8e-38 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10021754 pacid=23154344 polypeptide=Lus10021754 locus=Lus10021754.g ID=Lus10021754.BGIv1.0 annot-version=v1.0 ATGCAATCAGATTCGCAGCAGCCGAAGGAGGAGCTCCAAAATCAACAACATCGGCGGCAACAACAACATACGCCGCCTCCTCCTCCACCGTCACAATCGT GGGTTCAGATGCACTACCCACCGGCGGCAATGGTAATGCCGCATCAAATTTTCCCACCGCATCAGCATTACTCTTTGCATCCACCGCCTCCCCACCACTA TATGGCTAACGTCGCCGCTACTGCCACCTATCACCGCCAGTACCAGCACCCAACTGTCGCAGTCGCCTCTCCCCACCGCCATCCCCCGCAGCATACCCAT AACCACCTAGGATCTGCCGCTGAGAATAAAACCGTCTGGATTGGAGATTTACATAACTGGATGGACGAGAATTACCTCCACACCTGCTTCGCTTCCATCG GCGAGATTTCTTCAATTAAGGTTATTCGGAATAAGCACACTGGTTTATCCGAAGGCTATGGGTTTGTGGAGTTCTTTACACATGCCACAGCTGAAAAAAT TCTACAGAACTATACTGGCATTTTGATGCCTAATACTGACCAGCCCTTCCGTCTTAACTGGGCAACATTTAGCACGGGTGACAAGCGATCAGATAATGCT CCTGATCTTTCTATTTTCGTAGGGGATTTAGCTGCAGATGTTACTGATACTTTACTACATGAAACTTTTGCCAGTAGATACCCGTCAGTTAAAGCAGCAA AAGTTGTATTTGATGCCAACACTGGCCGTTCAAAGGGGTACGGTTTTGTTAGGTTTGGAGATGACAGTGAAAGAACTCAGGCAATGACTGAAATGTATGG AGTGTATTGTTCTAGTCGGCCAATGCGTATTGGCCCTGCAACTCCCCGAAAGTCTTCTGGATATCAACAACAAGGTGGACATGCATCAAATGGTTCCTCT ACCCCAATTCATCAATCGGACAGTGATTCCACAAATACGACAATATTTGTAGGAGGGCTTGATCCCAATGTCACTGATGAGGATCTCAAACAGACTTTCT CCAACCACGGTGAGATAGTTTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTCGTACAATTCGCTGACAGGGGCAATGCTGAGGAGGCATTGCAGAA GCTGAATGGCACAATAATAGGCAAGCAAACCGTTCGCCTCTCTTGGGGTCGCAATCCAGCAAACAAGCAGTTCAGGGTCGATTTTGGGAACCAATGGAGT GGGGCATACTATGGAGGACAAGTTTACGATGGTTATGGATACGTCGTACAACCTCCACCCCAGGATCCAAGGATGTATGCTGCAGCAGCAGCTGCGTACG GGGCGTATCCTTTGTATGGAACACATCAACAACAGGTAAGCTAA
AA sequence Show only first row Show all	>Lus10021754 pacid=23154344 polypeptide=Lus10021754 locus=Lus10021754.g ID=Lus10021754.BGIv1.0 annot-version=v1.0 MQSDSQQPKEELQNQQHRRQQQHTPPPPPPSQSWVQMHYPPAAMVMPHQIFPPHQHYSLHPPPPHHYMANVAATATYHRQYQHPTVAVASPHRHPPQHTH NHLGSAAENKTVWIGDLHNWMDENYLHTCFASIGEISSIKVIRNKHTGLSEGYGFVEFFTHATAEKILQNYTGILMPNTDQPFRLNWATFSTGDKRSDNA PDLSIFVGDLAADVTDTLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTQAMTEMYGVYCSSRPMRIGPATPRKSSGYQQQGGHASNGSS TPIHQSDSDSTNTTIFVGGLDPNVTDEDLKQTFSNHGEIVSVKIPVGKGCGFVQFADRGNAEEALQKLNGTIIGKQTVRLSWGRNPANKQFRVDFGNQWS GAYYGGQVYDGYGYVVQPPPQDPRMYAAAAAAYGAYPLYGTHQQQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	0	1
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	2.2	0.9617
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	5.5	0.9558
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	5.5	0.9469
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	9.4	0.9295
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	12.1	0.9172
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	12.3	0.9390
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	12.8	0.9440
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	14.5	0.9416
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	14.7	0.9319
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	15.9	0.9353

Compare expression of checked genes

Lus10021754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.