Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26540 312 / 3e-106 ATUROS, ATDUF3, HEMD ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032769 [exp] 488 / 1e-175 AT2G26540 330 / 6e-113 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034700 [exp] 368 / 2e-128 AT2G26540 335 / 2e-115 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02602 [flax] [poplar] HEM4 Uroporphyrinogen-III synthase HemD
Representative CDS sequence Show only first row Show all	>Lus10021755 pacid=23154329 polypeptide=Lus10021755 locus=Lus10021755.g ID=Lus10021755.BGIv1.0 annot-version=v1.0 ATGTCGACTCTGTTCGTCTCCTCCACTTTCCTCATTCTCCATCCCTCTCCGGCTTCCGCTTCTTTTGGCCGCCGTCGGTGCTGCTTCGGAATCAGAGCTT CCTCCTCCTATTCGCTTTCTGCAGCCCCTTCGTCTGCGTCTGCCTCCCAACCGAAAGTCGTCGTCACTAGGGAGCGTGGCAAGAACGGAAAGCTTATCAA TGCTCTGGCAAAACATGGGATCAGTTTTCTGGAACTCCCTCTAATTCAGCATACAGCGGGACCTGATTCCGCCAGATTCTCCTCTGTATTGAGAGATATA ATATTTGATTGGATCGTCATAACATCCCCTGAAGCAGGTTCAGTCTTTCTGGAGGCGTGGAAGGAAGCTGGAACCCCTAAGGTTAAGATAGCTGCTGTGG GAGCTGGCACAGCGAGCATTTTTGAAGGGGTCATCCAATCTTCCAACCGAGCACTTGACATTGCCTTCTTACCATCAAAAGCAACGGGCAAGGTTTTGGC ATCAGAGCTCCCAAACGACGGGAATAGAAAATGCACAGTCTTGTATCCAGCGTCTGCTAAAGCAGGCAATGAGATCCAGGATGGCCTTTCAAACCGTGGA TTTGATGTCACGAGACTAAATACATATACAGCGATTCCGGTGGATCATGTTGATCAAACAGTTCTGGAAGAGGCACAATCGGTTCCTGTTGTGGCAGTTG CTTCACCTTCTGCAATTCGTGCCTGGCTTAAACTTACTTCAGAATCAGGACATGGGAACAATTCTGTGGCATGTATTGGTGAGACTACAGCTGCAGCTGC AAAAAGGTTGGGGTTTAAGCACGTGTACTATCCAACACAGCCTGGCCTTGAAGGGTGGGTAGGCAGCATATTGGAAGCATTGAGAGCACACGAAATGAGT CAGAAGCTGGAAGTTTCATAG
AA sequence Show only first row Show all	>Lus10021755 pacid=23154329 polypeptide=Lus10021755 locus=Lus10021755.g ID=Lus10021755.BGIv1.0 annot-version=v1.0 MSTLFVSSTFLILHPSPASASFGRRRCCFGIRASSSYSLSAAPSSASASQPKVVVTRERGKNGKLINALAKHGISFLELPLIQHTAGPDSARFSSVLRDI IFDWIVITSPEAGSVFLEAWKEAGTPKVKIAAVGAGTASIFEGVIQSSNRALDIAFLPSKATGKVLASELPNDGNRKCTVLYPASAKAGNEIQDGLSNRG FDVTRLNTYTAIPVDHVDQTVLEEAQSVPVVAVASPSAIRAWLKLTSESGHGNNSVACIGETTAAAAKRLGFKHVYYPTQPGLEGWVGSILEALRAHEMS QKLEVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10021755 [exp]	0	1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	7.5	0.6637
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	11.5	0.7105
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	17.7	0.7051
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	18.4	0.6946
AT1G63610			unknown protein		Lus10016008 [exp]	21.1	0.6804
AT1G28100			unknown protein		Lus10001800 [exp]	22.2	0.6695
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	28.6	0.6423
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	37.5	0.6007
AT5G06440			unknown protein		Lus10013601 [exp]	42.7	0.6344
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	43.0	0.6452

Compare expression of checked genes

Lus10021755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.