Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42690 439 / 3e-147 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 427 / 7e-142 Protein of unknown function, DUF547 (.1.2.3) AT2G39690 209 / 1e-60 Protein of unknown function, DUF547 (.1.2) AT3G12540 208 / 1e-59 Protein of unknown function, DUF547 (.1) AT5G60720 177 / 3e-47 Protein of unknown function, DUF547 (.1) AT1G16750 139 / 9e-35 Protein of unknown function, DUF547 (.1) AT5G66600 135 / 4e-33 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 133 / 2e-32 Protein of unknown function, DUF547 (.1) AT5G47380 130 / 2e-31 Protein of unknown function, DUF547 (.1) AT3G13000 125 / 6e-30 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032768 [exp] 962 / 0 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10021450 [exp] 212 / 2e-59 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 184 / 2e-53 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10016786 [exp] 147 / 5e-37 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 147 / 5e-37 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 134 / 2e-32 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 130 / 3e-31 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 124 / 2e-29 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 119 / 6e-28 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034800 [exp] 612 / 0 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.007G041100 [exp] 452 / 3e-151 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.002G128400 [exp] 417 / 6e-140 AT5G42690 316 / 2e-102 Protein of unknown function, DUF547 (.1.2.3) Potri.010G202900 [exp] 226 / 1e-65 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 221 / 1e-63 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.005G136350 [exp] 173 / 4e-51 AT4G37080 211 / 2e-66 Protein of unknown function, DUF547 (.1.2.3) Potri.007G033100 [exp] 149 / 5e-38 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 148 / 2e-37 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 139 / 2e-34 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 129 / 4e-31 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10021756 pacid=23154338 polypeptide=Lus10021756 locus=Lus10021756.g ID=Lus10021756.BGIv1.0 annot-version=v1.0 ATGAGTACAATCGCCAAGATTACTGAGCTACAGAAGCAGCAACAGCAGCAGCAGCACTCCGCCATGAAAGCACCAGCCAAGCTTCCCAAATTCATTAGAA ACAACAAGTCTCAGATTTTGACTTCCTTCAATTCCATGTCGATATCTGGGGAAAACCAGAAAACAATGCAGCAGCAGGGAAGCAATCAAATTGATGGAGC CAGCAATTCAACCAAATCCCGCAAGGCTGGGACAAGAGGAGACAGGAAGATGGCTCTGCAACAAGATGTAGATAAGCTGAGGAAGAAGCTAAGATACGAA GAGAATGTCCACAGAGCACTAGAAAGAGCTTTCAATAGACCTCTGGGAGCTCTTCCTCGCCTCCCTCCTTATCTTCCCTCTTCTACACTGGAGCTCCTAG CTGAAGTGGCAGTGCTGGAAGAGGAAGTTGTGCGGCTGGAAGAGCAGGTGGTTCATTTCAGACAGGACTTGTATCAGGAAGCTGTCTACATTTCCACCTC GAAGACGAAGAACAACGTCGAGAGTTTCGCTGATTTATATGATTCGGTTCCCAGAAAGAATCCACAGGATAGAAGCTGCAGCAATGAGTCCACATCCAAA TACTTTAGGAAAGATGAAGAGCAGGGGAAAGAAAACCAATTGGGCTCGTCTAATTTCGAAAGAAAGGTCAAGGGATCATCACCATCACCATCAGCTCGTA ATGCGCAGACGATTCGAACTATGGTGAAACTAGTCGATCGTAATAATAAACAGGAGAAGCGTTTTTCTCCTCAGAAACAACAGCTGAAAAAACCAGAAGG TAGAAGCAGCATTGGGATCACACTGGTAGATGACAACCCGAACAACGTTTCGGAAGATATTTTAAAATGTTTGTGTAGCATTTTCACAAGGATGAGCACG AGGAAGAACAGGCAGACATTGGATGATTTGCCATTCTTGTCTACTTCAGAAGATGAGAGGTGGGATGATCCTTATGGGATATGTACAGAATTCGGGAGGA GAGACGTTGGTCCTTATAAGAATTTATTAGCAATTGAACCTTACACTATGAATCCCAACAGAACATCCAACTCTTTGTTTCTTCTCCATAGACTCAACCT CCTACTTGGTAAACTTGCCGGTGTCAACTTGGAGAAACTGAGCCATCAGGAGAAACTGGCGTTTTGGATAAACATATACAATTCCTGCATGATGAATGCA TTTCTAGAGTATGGAATACCAGAAAACCCGGAGATGGTTGTTGCTGTAATGAGACAGGCAACAATAAATGTTGGGGGACATTTGCTTAGTGCAATAACCA TTGAACACTTCATTCTCAGATTGCCTTATCACTCCAAATATGCATTTTCAAAGGGGTCTAAGAACGATGAGATGACAGCAAGAAGTAAATTCGGTTTGGA GTTATCTGAACCACTGGTAACATTTGCCCTTTCATGTGGAAGTTGGTCTTCCCCAGCAGTGAGAGTTTATACTTCATCCCAGGTTGAGAATCAACTGGAG GCAGCCAAAAAGGAGTACTTGCAAGCAGCCATTGGGATTTCAGCTCACAAATTCGCAATCCCAAAGCTGTTGGATTGGTATCTACTGGACTTTGCAAAGG ACCTGGACTCATTGTTGGACTGGATTTGCCTTCAGCTACCAAGTGAACTTGGGAAAGAAGCAATCAAGTCACTTGACAGAGGAAAGTCTCAGACAAATCC ACAAATCATCCAGATAATGCCCTATGAGTTTAGTTTCAGGATCATGATTGGACAAACACTGGAAAATCTCCAAAAGGAGATGGACGAGATAAAAGGACAG CTAGCTGGATTTGATAAAATGAAGGAGCGGATGAAGTTGCTCGTAAGATTGATGGCTGATAAGAGGAACGTTAGAGAAGATGAAGACCAAAAGGTTGATT CGGAAGTTCCTTTTCTAGAGCCAACTGGTGAAGGACATTTAGAAAGGAGAGTCGTCGTGATCGGTAATGAACAAGAGAAACCAGAGAAGCTAGTGGGGAT GGTGTTCACACTAAATTTGAGTATGTGA
AA sequence Show only first row Show all	>Lus10021756 pacid=23154338 polypeptide=Lus10021756 locus=Lus10021756.g ID=Lus10021756.BGIv1.0 annot-version=v1.0 MSTIAKITELQKQQQQQQHSAMKAPAKLPKFIRNNKSQILTSFNSMSISGENQKTMQQQGSNQIDGASNSTKSRKAGTRGDRKMALQQDVDKLRKKLRYE ENVHRALERAFNRPLGALPRLPPYLPSSTLELLAEVAVLEEEVVRLEEQVVHFRQDLYQEAVYISTSKTKNNVESFADLYDSVPRKNPQDRSCSNESTSK YFRKDEEQGKENQLGSSNFERKVKGSSPSPSARNAQTIRTMVKLVDRNNKQEKRFSPQKQQLKKPEGRSSIGITLVDDNPNNVSEDILKCLCSIFTRMST RKNRQTLDDLPFLSTSEDERWDDPYGICTEFGRRDVGPYKNLLAIEPYTMNPNRTSNSLFLLHRLNLLLGKLAGVNLEKLSHQEKLAFWINIYNSCMMNA FLEYGIPENPEMVVAVMRQATINVGGHLLSAITIEHFILRLPYHSKYAFSKGSKNDEMTARSKFGLELSEPLVTFALSCGSWSSPAVRVYTSSQVENQLE AAKKEYLQAAIGISAHKFAIPKLLDWYLLDFAKDLDSLLDWICLQLPSELGKEAIKSLDRGKSQTNPQIIQIMPYEFSFRIMIGQTLENLQKEMDEIKGQ LAGFDKMKERMKLLVRLMADKRNVREDEDQKVDSEVPFLEPTGEGHLERRVVVIGNEQEKPEKLVGMVFTLNLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	0	1
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	4.7	0.7932
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	10.1	0.7161
AT3G61660			unknown protein		Lus10032366 [exp]	11.1	0.7316
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	11.7	0.8167
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	19.8	0.6772
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	22.2	0.7142
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	26.1	0.7631
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	33.5	0.7141
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	35.9	0.7476
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	36.1	0.7161

Compare expression of checked genes

Lus10021756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.