Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26530 127 / 1e-33 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT2G15760 65 / 2e-11 Protein of unknown function (DUF1645) (.1) AT3G62630 54 / 9e-08 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032766 [exp] 471 / 5e-167 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 140 / 1e-38 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 136 / 3e-37 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10014025 [exp] 87 / 9e-19 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 86 / 2e-18 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 85 / 3e-18 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 74 / 2e-14 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 52 / 3e-07 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 52 / 3e-07 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034900 [exp] 253 / 2e-81 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 237 / 4e-75 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.004G143500 [exp] 109 / 7e-27 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 108 / 2e-26 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 57 / 8e-09 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 56 / 2e-08 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 42 / 0.0005 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10021757 pacid=23154306 polypeptide=Lus10021757 locus=Lus10021757.g ID=Lus10021757.BGIv1.0 annot-version=v1.0 ATGGAAGTTGTGTTACCTTCATCACCAGGCGGAGGCATGGGTTTCGATTTCAACGACGCAAGGCCACTGCCGTTCCTCAGCGCTCCGACTTCCCCACGGC GGTTCGGAGACTTCACACTGAGTGCTCCCACGAGCCCTTCTCGCATGGCCGAGTTCTACCGCAACTTTGAGGATTTCTCCATCATGGGACAACAATATAG AGAAGATGAAGAATATGAAGATGATCAGAACGGCGTACCTTTCCATTGGGAAGAGAGGCCTGGGACGCCCAAGTCTCCCAGGAAGCTGCCCTCGTTCAAG GACGAAGATTTTGCTTTCGATTTCAGCGCGGATATGGAGAAGGAATCTCTCCCTGCCGACGAGCTTTTCGACGGTGGCAAGATTCGGCCTTTGAAGCTCC CGCCACGGTTGCTGCAGGTGGAAGACATCAAGTCACCGCTTTTGTCTTCTTCGCCCAGGTCTCCCAGGTCGCCTATTGAGAAAGGGAAGAGGATCATAAT TGGAGCCTTGTCGCCCAGGAAGAAGAAGGTTTCGGATCCTTTTGAAGCTGCAATGGAGATTAATGCTCAGAAGGTGAACAATGAAAGAGGGAGAACTTCG GGTCTTACCTCGAGTTCAAGCCGTAGAGGAAAGACGAGATCTCTTTCTCCTTACAGAGTTTCACAGTATCCATGGGAGGAAGATGAAAGACACCAGCAGC AACAACAACAACAGCAACAACAACAAGCTGGTGAACAAACTGAATTGGGTGGCTTGAAAACGACTTCCTTCTCAACAACTGTAACTGCTACAAAGAGTTC TTCTTCGAGGAAGTGGAGATTCAGGGATCTGTTGCTGTTCAGAAGTGCATCAGAAGGAAGAGCTTCAGATAGAGATACTTACAGGAAGCATGTTGCTGCT TTCGGTCTGTTCAGGAGACATGATGACGTCAAGAGCTGCAGCATCCGGTCATCGGATAGCTCTGGTTCGAATTCTGGGTCGAGGAGAAAAGGACCGGTCT CGGCACATGAGTTGCATTACACTACCAACAAAGCTGCATCAGAGGGTCTGAGGAAGAAGACTTTCTTGCCTTACAAACAGGGGATTCTCGGCAGATTAGC ATTCAATCCATCGCATGCTCGATAA
AA sequence Show only first row Show all	>Lus10021757 pacid=23154306 polypeptide=Lus10021757 locus=Lus10021757.g ID=Lus10021757.BGIv1.0 annot-version=v1.0 MEVVLPSSPGGGMGFDFNDARPLPFLSAPTSPRRFGDFTLSAPTSPSRMAEFYRNFEDFSIMGQQYREDEEYEDDQNGVPFHWEERPGTPKSPRKLPSFK DEDFAFDFSADMEKESLPADELFDGGKIRPLKLPPRLLQVEDIKSPLLSSSPRSPRSPIEKGKRIIIGALSPRKKKVSDPFEAAMEINAQKVNNERGRTS GLTSSSSRRGKTRSLSPYRVSQYPWEEDERHQQQQQQQQQQQAGEQTELGGLKTTSFSTTVTATKSSSSRKWRFRDLLLFRSASEGRASDRDTYRKHVAA FGLFRRHDDVKSCSIRSSDSSGSNSGSRRKGPVSAHELHYTTNKAASEGLRKKTFLPYKQGILGRLAFNPSHAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	0	1
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10037476 [exp]	2.4	0.9748
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	5.1	0.9812
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	9.4	0.9766
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024060 [exp]	13.3	0.9569
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	14.7	0.9660
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	15.1	0.9674
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	16.0	0.9685
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	18.5	0.9648
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	20.6	0.9745
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	22.5	0.9737

Compare expression of checked genes

Lus10021757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.