Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36210 948 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G14570 70 / 3e-12 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032765 [exp] 612 / 0 AT5G36210 606 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039405 [exp] 75 / 1e-13 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10015363 [exp] 47 / 7e-05 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G128700 [exp] 1051 / 0 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G160400 [exp] 65 / 1e-10 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10021758 pacid=23154330 polypeptide=Lus10021758 locus=Lus10021758.g ID=Lus10021758.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGACCATCGGTATAGCCACTCTCACTCGGTTGCCTTTAACTTTGCCTTTGCCTGCTCTGCCATCTTCTCCCTCCGCCTTCAGCTGCTTCC GCTTCAGTATTCTCCGTACCGTCTCACCTCAGCGGCACCACCGTCACCATCGCTTTTGTTCAATGGCTTCTTCGGTGTCCACACAAGAGGTAGCCACTGC TCCTTACGGGTCGTGGAAGTCCCCAATCACTGCGGATATTGTCTCCGGTTCTTCCAAGCGCCTCGGTGGTACTGCTGTCGACGGCCAAGGACTTCTTATC GTGCTCGAGTCCCGTCCCAATGAAGAAGGACGATCGGTTCTTGTAAGACTAGCTAAAGAGACTGGAGATGAACCTGATGACGTCACCCCGAAGGAGTTCG GCGTGAGGACTACTTGCCAGGAGTATGGAGGTGGTGCGTTTGCGGTATCGGGCGACACCGTCGTTTTCTCCAATTACAAGGATCAAAGGCTTTACAAGCA ATCCATTGATGACCAAGATTCTTCGCTGGTGCCCATTACACTGGATTATGGTGGTCCAGTAATTACTTATGCTGATGGAGTCTTTGATCATCGGTTTAAT CGCTATATCACTGTAAGGGAAGATTGCCGTGAAAGTTCCACAAATGGAACCACAACAATTGTAGCAGTTGGCCTCAACGAGAAGGATATCCAAGAGCCAA CAGTATTGGTTGGTGGGAATGACTTCTATGCGTTCCCACGCCTGGATCCAAAAGGTGAACGCATGGCTTGGATTGAGTGGGGTCACCCTAACATGCCATG GGACAAATCAGAACTTTGGGTGGGATACATATCTGAAAAAGGAGAGATCTACAAGCGTACTTGTGTTGCCGGTTATGATCCTTCACTTGTGGAGTCTCCT ACTGAGCCTCAGTGGTCCTCCAACGGTGAACTGTTTTTCGTTACTGATAGAAAAAGTGGATTTTGGAATCTATATAAATGGATCGAATCTGAAAATAGTG TGCAAGAAGTGTATTCCTTGGATGCTGAATTCTCCAAACCATTATGGGTGTTTGGCTCAAGTTCTTATGTCCTGCTTCAGAATAATGAGGGAAAAAACCT AATTGCTTGTGGCTATAGGCAGAAAGGAAGATCGTACTTCAGTATTATCGATGATGCTCAAAGCTCTTTATCTGTACTTGATATTCCCTTCACAGACATA GATAACATTACTTCAGGCAACCATTGCCTATACATTGAGGGAGCATCTGCTATTAATCCGTCATCAGTGGCTAAGGTGCTGAATCACGTTTATACTACGT TTCTTGTATTAGCTCAGGAGAGGCTTAAGCTTTACAGTGTTCTTTTCATGATAGTTAGGACCAAAGCTCTGGACTTCAACATCGTTTGGTCATCTTCACC AGACAGTGTGAAGTACAAGTCTTACTTTAGCTTGCCAGAGTTGATCGAATTCCCTACAGAAGTGCCTGGGCAAAATGCATACGCATACTTCTATCCTCCA TCTAATCCAGATTACCAAGCTGTCCAGGGTGAAAAACCTCCATTGTTGCTGAAAAGTCACGGTTATGGAAGAGAATACAGAGAACGTTTGCTGCTAAAAT GGGGAATTGTTGACGTCAATGACTGTTGCAGTTGTGCAAATTTTTTGGTGGACAGTGGTCTAGTTGATGTGAATCGGCTTTGCATAACTGGTGGGTCAGC TGGGGGGTACACAACCTTGGCTGCTCTTGCTTTCAAAAACACATTCAAGGCTGGAGCATCCTTGTATGGGGTGGCTGACGTAGGCCTCTTAAGAGCAGAG ACACACAAATTTGAGTCTCATTATATCGATAATCTTGTTGGTGCTGAGAAGGATTACTATGAAAGGTCTCCAATCAACTTTATAGACCAATTTTCCTGCC CCATAATACTTTTTCAAGGATTGGACGATAAGGTTGTGCCCCCTGATCAAGCTCGCAAAATCTACGAGGCGCTGAAGAAAAAGGGTTTGCCAGTTGCCCT TGTAGAGTATGAAGGAGAACAGCATGGCTTCCGTAAGGCGGAGAACATTAAGTTCACTATGGAACAGCAAATGGTATTCTTTGCACGCTTGGTTGGGAAA TTCAACATTGCTGACGAGATTACTCCGATCAAAATCGAGAATTTTGACTAG
AA sequence Show only first row Show all	>Lus10021758 pacid=23154330 polypeptide=Lus10021758 locus=Lus10021758.g ID=Lus10021758.BGIv1.0 annot-version=v1.0 MASLTIGIATLTRLPLTLPLPALPSSPSAFSCFRFSILRTVSPQRHHRHHRFCSMASSVSTQEVATAPYGSWKSPITADIVSGSSKRLGGTAVDGQGLLI VLESRPNEEGRSVLVRLAKETGDEPDDVTPKEFGVRTTCQEYGGGAFAVSGDTVVFSNYKDQRLYKQSIDDQDSSLVPITLDYGGPVITYADGVFDHRFN RYITVREDCRESSTNGTTTIVAVGLNEKDIQEPTVLVGGNDFYAFPRLDPKGERMAWIEWGHPNMPWDKSELWVGYISEKGEIYKRTCVAGYDPSLVESP TEPQWSSNGELFFVTDRKSGFWNLYKWIESENSVQEVYSLDAEFSKPLWVFGSSSYVLLQNNEGKNLIACGYRQKGRSYFSIIDDAQSSLSVLDIPFTDI DNITSGNHCLYIEGASAINPSSVAKVLNHVYTTFLVLAQERLKLYSVLFMIVRTKALDFNIVWSSSPDSVKYKSYFSLPELIEFPTEVPGQNAYAYFYPP SNPDYQAVQGEKPPLLLKSHGYGREYRERLLLKWGIVDVNDCCSCANFLVDSGLVDVNRLCITGGSAGGYTTLAALAFKNTFKAGASLYGVADVGLLRAE THKFESHYIDNLVGAEKDYYERSPINFIDQFSCPIILFQGLDDKVVPPDQARKIYEALKKKGLPVALVEYEGEQHGFRKAENIKFTMEQQMVFFARLVGK FNIADEITPIKIENFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	0	1
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	1.7	0.8524
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	1.7	0.8832
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	7.4	0.8443
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	9.6	0.8816
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	11.0	0.8181
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	16.6	0.8176
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	17.2	0.8225
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	17.7	0.8250
AT5G44150			unknown protein		Lus10018632 [exp]	21.0	0.8049
AT1G34630			unknown protein		Lus10034188 [exp]	21.0	0.7624

Compare expression of checked genes

Lus10021758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.